Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
32778 | 3' | -57.8 | NC_007346.1 | + | 128403 | 0.66 | 0.975131 |
Target: 5'- gGCGCCUGccACCaUGGUggAGGCgGCGGc -3' miRNA: 3'- gUGCGGGC--UGGaACCA--UCUGgCGCUc -5' |
|||||||
32778 | 3' | -57.8 | NC_007346.1 | + | 128454 | 0.66 | 0.975131 |
Target: 5'- gGCGCCUGccACCaUGGUggAGGCgGCGGc -3' miRNA: 3'- gUGCGGGC--UGGaACCA--UCUGgCGCUc -5' |
|||||||
32778 | 3' | -57.8 | NC_007346.1 | + | 268352 | 0.66 | 0.970083 |
Target: 5'- -gUGUCCGAC--UGGUAGAccaCCGCGAu -3' miRNA: 3'- guGCGGGCUGgaACCAUCU---GGCGCUc -5' |
|||||||
32778 | 3' | -57.8 | NC_007346.1 | + | 38292 | 0.68 | 0.938313 |
Target: 5'- gCGCGUCCGgggacgcuaGCCaUGGgggugGGACCGUGAa -3' miRNA: 3'- -GUGCGGGC---------UGGaACCa----UCUGGCGCUc -5' |
|||||||
32778 | 3' | -57.8 | NC_007346.1 | + | 171261 | 1.09 | 0.005877 |
Target: 5'- aCACGCCCGACCUUGGUAGACCGCGAGg -3' miRNA: 3'- -GUGCGGGCUGGAACCAUCUGGCGCUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home