miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32778 5' -56.3 NC_007346.1 + 307144 0.66 0.99035
Target:  5'- ---cGGCGGgcUCgGCggCGGCGGCGACGGc -3'
miRNA:   3'- aagaCUGUC--AGgCG--GCUGCUGCUGCC- -5'
32778 5' -56.3 NC_007346.1 + 309709 0.66 0.99035
Target:  5'- ---cGGCGGgcUCgGCggCGGCGGCGACGGc -3'
miRNA:   3'- aagaCUGUC--AGgCG--GCUGCUGCUGCC- -5'
32778 5' -56.3 NC_007346.1 + 128249 0.66 0.98914
Target:  5'- --gUGGCGGUgauggUGgCGGCGGCGACGGu -3'
miRNA:   3'- aagACUGUCAg----GCgGCUGCUGCUGCC- -5'
32778 5' -56.3 NC_007346.1 + 179059 0.66 0.987814
Target:  5'- ---aGACAGUUCGCauuuGCGACGugGa -3'
miRNA:   3'- aagaCUGUCAGGCGgc--UGCUGCugCc -5'
32778 5' -56.3 NC_007346.1 + 382436 0.66 0.987814
Target:  5'- ---aGGCAG-CCGC--GCGACGAUGGa -3'
miRNA:   3'- aagaCUGUCaGGCGgcUGCUGCUGCC- -5'
32778 5' -56.3 NC_007346.1 + 149495 0.67 0.983083
Target:  5'- -cUUGACGGaacgagaaugCCGCCGGCGAa-GCGGu -3'
miRNA:   3'- aaGACUGUCa---------GGCGGCUGCUgcUGCC- -5'
32778 5' -56.3 NC_007346.1 + 309746 0.67 0.981232
Target:  5'- --gUGGCGGUggacUUGgUGGCGGCGACGGg -3'
miRNA:   3'- aagACUGUCA----GGCgGCUGCUGCUGCC- -5'
32778 5' -56.3 NC_007346.1 + 238338 0.67 0.981232
Target:  5'- --aUGGCGGcucaUCUGCgacCGGCGAUGACGGc -3'
miRNA:   3'- aagACUGUC----AGGCG---GCUGCUGCUGCC- -5'
32778 5' -56.3 NC_007346.1 + 311381 0.67 0.97708
Target:  5'- -cUUGACGG-CagagaaGgCGGCGGCGACGGa -3'
miRNA:   3'- aaGACUGUCaGg-----CgGCUGCUGCUGCC- -5'
32778 5' -56.3 NC_007346.1 + 349796 0.67 0.97708
Target:  5'- ---cGGCGGUggCGgCGGCGGCGGCGGc -3'
miRNA:   3'- aagaCUGUCAg-GCgGCUGCUGCUGCC- -5'
32778 5' -56.3 NC_007346.1 + 135143 0.68 0.97229
Target:  5'- -aUUGGCGGUcuugaCCGCCGGUGGCGGUGGa -3'
miRNA:   3'- aaGACUGUCA-----GGCGGCUGCUGCUGCC- -5'
32778 5' -56.3 NC_007346.1 + 198835 0.68 0.97229
Target:  5'- --gUGGCGGUUgagauggcggCGgCGAUGGCGGCGGg -3'
miRNA:   3'- aagACUGUCAG----------GCgGCUGCUGCUGCC- -5'
32778 5' -56.3 NC_007346.1 + 170785 0.68 0.960622
Target:  5'- ---gGACcGUCCGUCGuCGuCGGCGGa -3'
miRNA:   3'- aagaCUGuCAGGCGGCuGCuGCUGCC- -5'
32778 5' -56.3 NC_007346.1 + 307181 0.7 0.923055
Target:  5'- --gUGGCGGUggacUUGgCGGCGGCGACGGg -3'
miRNA:   3'- aagACUGUCA----GGCgGCUGCUGCUGCC- -5'
32778 5' -56.3 NC_007346.1 + 238288 0.71 0.88887
Target:  5'- ---cGACGGUggcucaccuUCGaCCGGCGACGGCGGc -3'
miRNA:   3'- aagaCUGUCA---------GGC-GGCUGCUGCUGCC- -5'
32778 5' -56.3 NC_007346.1 + 207462 0.72 0.862171
Target:  5'- -gCUGGCauaAGUCCcauucguuGCCGACGACGAUGc -3'
miRNA:   3'- aaGACUG---UCAGG--------CGGCUGCUGCUGCc -5'
32778 5' -56.3 NC_007346.1 + 273925 0.72 0.840263
Target:  5'- -cUUGACgAGUCCGCCGACuuUGGCGa -3'
miRNA:   3'- aaGACUG-UCAGGCGGCUGcuGCUGCc -5'
32778 5' -56.3 NC_007346.1 + 128735 0.75 0.693724
Target:  5'- uUUCUGACGGUaaacCCGgCGGCGgugGCGGCGGu -3'
miRNA:   3'- -AAGACUGUCA----GGCgGCUGC---UGCUGCC- -5'
32778 5' -56.3 NC_007346.1 + 171225 1.08 0.009483
Target:  5'- uUUCUGACAGUCCGCCGACGACGACGGa -3'
miRNA:   3'- -AAGACUGUCAGGCGGCUGCUGCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.