Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32778 | 5' | -56.3 | NC_007346.1 | + | 307144 | 0.66 | 0.99035 |
Target: 5'- ---cGGCGGgcUCgGCggCGGCGGCGACGGc -3' miRNA: 3'- aagaCUGUC--AGgCG--GCUGCUGCUGCC- -5' |
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32778 | 5' | -56.3 | NC_007346.1 | + | 309709 | 0.66 | 0.99035 |
Target: 5'- ---cGGCGGgcUCgGCggCGGCGGCGACGGc -3' miRNA: 3'- aagaCUGUC--AGgCG--GCUGCUGCUGCC- -5' |
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32778 | 5' | -56.3 | NC_007346.1 | + | 128249 | 0.66 | 0.98914 |
Target: 5'- --gUGGCGGUgauggUGgCGGCGGCGACGGu -3' miRNA: 3'- aagACUGUCAg----GCgGCUGCUGCUGCC- -5' |
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32778 | 5' | -56.3 | NC_007346.1 | + | 179059 | 0.66 | 0.987814 |
Target: 5'- ---aGACAGUUCGCauuuGCGACGugGa -3' miRNA: 3'- aagaCUGUCAGGCGgc--UGCUGCugCc -5' |
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32778 | 5' | -56.3 | NC_007346.1 | + | 382436 | 0.66 | 0.987814 |
Target: 5'- ---aGGCAG-CCGC--GCGACGAUGGa -3' miRNA: 3'- aagaCUGUCaGGCGgcUGCUGCUGCC- -5' |
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32778 | 5' | -56.3 | NC_007346.1 | + | 149495 | 0.67 | 0.983083 |
Target: 5'- -cUUGACGGaacgagaaugCCGCCGGCGAa-GCGGu -3' miRNA: 3'- aaGACUGUCa---------GGCGGCUGCUgcUGCC- -5' |
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32778 | 5' | -56.3 | NC_007346.1 | + | 309746 | 0.67 | 0.981232 |
Target: 5'- --gUGGCGGUggacUUGgUGGCGGCGACGGg -3' miRNA: 3'- aagACUGUCA----GGCgGCUGCUGCUGCC- -5' |
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32778 | 5' | -56.3 | NC_007346.1 | + | 238338 | 0.67 | 0.981232 |
Target: 5'- --aUGGCGGcucaUCUGCgacCGGCGAUGACGGc -3' miRNA: 3'- aagACUGUC----AGGCG---GCUGCUGCUGCC- -5' |
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32778 | 5' | -56.3 | NC_007346.1 | + | 311381 | 0.67 | 0.97708 |
Target: 5'- -cUUGACGG-CagagaaGgCGGCGGCGACGGa -3' miRNA: 3'- aaGACUGUCaGg-----CgGCUGCUGCUGCC- -5' |
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32778 | 5' | -56.3 | NC_007346.1 | + | 349796 | 0.67 | 0.97708 |
Target: 5'- ---cGGCGGUggCGgCGGCGGCGGCGGc -3' miRNA: 3'- aagaCUGUCAg-GCgGCUGCUGCUGCC- -5' |
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32778 | 5' | -56.3 | NC_007346.1 | + | 135143 | 0.68 | 0.97229 |
Target: 5'- -aUUGGCGGUcuugaCCGCCGGUGGCGGUGGa -3' miRNA: 3'- aaGACUGUCA-----GGCGGCUGCUGCUGCC- -5' |
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32778 | 5' | -56.3 | NC_007346.1 | + | 198835 | 0.68 | 0.97229 |
Target: 5'- --gUGGCGGUUgagauggcggCGgCGAUGGCGGCGGg -3' miRNA: 3'- aagACUGUCAG----------GCgGCUGCUGCUGCC- -5' |
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32778 | 5' | -56.3 | NC_007346.1 | + | 170785 | 0.68 | 0.960622 |
Target: 5'- ---gGACcGUCCGUCGuCGuCGGCGGa -3' miRNA: 3'- aagaCUGuCAGGCGGCuGCuGCUGCC- -5' |
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32778 | 5' | -56.3 | NC_007346.1 | + | 307181 | 0.7 | 0.923055 |
Target: 5'- --gUGGCGGUggacUUGgCGGCGGCGACGGg -3' miRNA: 3'- aagACUGUCA----GGCgGCUGCUGCUGCC- -5' |
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32778 | 5' | -56.3 | NC_007346.1 | + | 238288 | 0.71 | 0.88887 |
Target: 5'- ---cGACGGUggcucaccuUCGaCCGGCGACGGCGGc -3' miRNA: 3'- aagaCUGUCA---------GGC-GGCUGCUGCUGCC- -5' |
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32778 | 5' | -56.3 | NC_007346.1 | + | 207462 | 0.72 | 0.862171 |
Target: 5'- -gCUGGCauaAGUCCcauucguuGCCGACGACGAUGc -3' miRNA: 3'- aaGACUG---UCAGG--------CGGCUGCUGCUGCc -5' |
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32778 | 5' | -56.3 | NC_007346.1 | + | 273925 | 0.72 | 0.840263 |
Target: 5'- -cUUGACgAGUCCGCCGACuuUGGCGa -3' miRNA: 3'- aaGACUG-UCAGGCGGCUGcuGCUGCc -5' |
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32778 | 5' | -56.3 | NC_007346.1 | + | 128735 | 0.75 | 0.693724 |
Target: 5'- uUUCUGACGGUaaacCCGgCGGCGgugGCGGCGGu -3' miRNA: 3'- -AAGACUGUCA----GGCgGCUGC---UGCUGCC- -5' |
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32778 | 5' | -56.3 | NC_007346.1 | + | 171225 | 1.08 | 0.009483 |
Target: 5'- uUUCUGACAGUCCGCCGACGACGACGGa -3' miRNA: 3'- -AAGACUGUCAGGCGGCUGCUGCUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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