miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32779 5' -55.6 NC_007346.1 + 261135 0.66 0.991171
Target:  5'- uGggCGACGCGCGUccgaguGUgGCuCGCGGGAu -3'
miRNA:   3'- -CuaGCUGCGUGCA------CAgCGcGCGCUUU- -5'
32779 5' -55.6 NC_007346.1 + 257376 0.66 0.991171
Target:  5'- ---gGAUGCGCGUGUCaCGCGUa--- -3'
miRNA:   3'- cuagCUGCGUGCACAGcGCGCGcuuu -5'
32779 5' -55.6 NC_007346.1 + 48415 0.66 0.985846
Target:  5'- --aCGAUGCACuUGUCGCGCaucGCGc-- -3'
miRNA:   3'- cuaGCUGCGUGcACAGCGCG---CGCuuu -5'
32779 5' -55.6 NC_007346.1 + 253982 0.67 0.978353
Target:  5'- uGUCG-CGCAauc-UCGCGCGCGGAGa -3'
miRNA:   3'- cUAGCuGCGUgcacAGCGCGCGCUUU- -5'
32779 5' -55.6 NC_007346.1 + 259489 0.67 0.97609
Target:  5'- --cCGACGaUugGauaUCGCGCGCGAGAu -3'
miRNA:   3'- cuaGCUGC-GugCac-AGCGCGCGCUUU- -5'
32779 5' -55.6 NC_007346.1 + 280015 0.68 0.968267
Target:  5'- uGGUgGAUGCGacccUGcCGCGCGCGAAAc -3'
miRNA:   3'- -CUAgCUGCGUgc--ACaGCGCGCGCUUU- -5'
32779 5' -55.6 NC_007346.1 + 241443 0.68 0.965296
Target:  5'- --cCGAgaGCAaCGcGUCGCGCGCGAu- -3'
miRNA:   3'- cuaGCUg-CGU-GCaCAGCGCGCGCUuu -5'
32779 5' -55.6 NC_007346.1 + 274050 0.68 0.965296
Target:  5'- cAUCGGCGU---UGUCGCGCGCa--- -3'
miRNA:   3'- cUAGCUGCGugcACAGCGCGCGcuuu -5'
32779 5' -55.6 NC_007346.1 + 259624 0.68 0.958779
Target:  5'- aGUCGAUGCACuUGUCGCaCGCa--- -3'
miRNA:   3'- cUAGCUGCGUGcACAGCGcGCGcuuu -5'
32779 5' -55.6 NC_007346.1 + 250731 0.69 0.934363
Target:  5'- --gCGugGCGCGUGgCGCGUuCGAAAc -3'
miRNA:   3'- cuaGCugCGUGCACaGCGCGcGCUUU- -5'
32779 5' -55.6 NC_007346.1 + 258752 0.73 0.808532
Target:  5'- aGUCGGCGUACGcaaucagcauggUGUCGCGaGCGAAGu -3'
miRNA:   3'- cUAGCUGCGUGC------------ACAGCGCgCGCUUU- -5'
32779 5' -55.6 NC_007346.1 + 171356 1.06 0.013385
Target:  5'- uGAUCGACGCACGUGUCGCGCGCGAAAg -3'
miRNA:   3'- -CUAGCUGCGUGCACAGCGCGCGCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.