miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32780 3' -53.8 NC_007346.1 + 154464 0.66 0.994365
Target:  5'- uAUGugGGCGGUUaCGCUUauCugUGCGg -3'
miRNA:   3'- -UACugUCGUCGA-GCGAAacGugACGU- -5'
32780 3' -53.8 NC_007346.1 + 220620 0.66 0.994365
Target:  5'- -cGACuGCAGUUUGUaUUGCaucguugaGCUGCAu -3'
miRNA:   3'- uaCUGuCGUCGAGCGaAACG--------UGACGU- -5'
32780 3' -53.8 NC_007346.1 + 156083 0.66 0.994365
Target:  5'- --aGCAGCAGCa-GCgggUGCuGCUGCAc -3'
miRNA:   3'- uacUGUCGUCGagCGaa-ACG-UGACGU- -5'
32780 3' -53.8 NC_007346.1 + 54735 0.66 0.99352
Target:  5'- cAUGACAcGUuGCUUGCUgugUGCAUauagUGCAu -3'
miRNA:   3'- -UACUGU-CGuCGAGCGAa--ACGUG----ACGU- -5'
32780 3' -53.8 NC_007346.1 + 44148 0.66 0.990361
Target:  5'- -gGACaAGCAGCggCGC---GCGCUGCu -3'
miRNA:   3'- uaCUG-UCGUCGa-GCGaaaCGUGACGu -5'
32780 3' -53.8 NC_007346.1 + 401094 0.67 0.987659
Target:  5'- gAUGGCAGCuGCagGCg--GCGgUGCAc -3'
miRNA:   3'- -UACUGUCGuCGagCGaaaCGUgACGU- -5'
32780 3' -53.8 NC_007346.1 + 303321 0.67 0.984406
Target:  5'- aAUG-CAGCGGCUCGUUgcugaGCAaUGCGa -3'
miRNA:   3'- -UACuGUCGUCGAGCGAaa---CGUgACGU- -5'
32780 3' -53.8 NC_007346.1 + 275251 0.68 0.978356
Target:  5'- -cGACAGCGGCUCGgUaucaaUGaGCUGCu -3'
miRNA:   3'- uaCUGUCGUCGAGCgAa----ACgUGACGu -5'
32780 3' -53.8 NC_007346.1 + 19501 0.68 0.970726
Target:  5'- cGUGAUuGCAGCgCGUUUuuuauugaagaaUGCACUGCu -3'
miRNA:   3'- -UACUGuCGUCGaGCGAA------------ACGUGACGu -5'
32780 3' -53.8 NC_007346.1 + 137762 0.72 0.855487
Target:  5'- -aGAUAGCAGC-CGCaa-GUACUGCAa -3'
miRNA:   3'- uaCUGUCGUCGaGCGaaaCGUGACGU- -5'
32780 3' -53.8 NC_007346.1 + 216908 0.77 0.633327
Target:  5'- --cAUAGCAacGCUCGCUUUGCAgUGCAa -3'
miRNA:   3'- uacUGUCGU--CGAGCGAAACGUgACGU- -5'
32780 3' -53.8 NC_007346.1 + 217358 1.07 0.012192
Target:  5'- uAUGACAGCAGCUCGCUUUGCACUGCAa -3'
miRNA:   3'- -UACUGUCGUCGAGCGAAACGUGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.