miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32781 3' -58.9 NC_007346.1 + 293391 0.66 0.956109
Target:  5'- aUCGUCAGau---GAUGAGaCGCCGUCa -3'
miRNA:   3'- -AGCGGUCagcguCUACUCgGCGGCAG- -5'
32781 3' -58.9 NC_007346.1 + 216918 0.66 0.956109
Target:  5'- cUCGCU--UUGCAGugcaaagcGAGCUGCUGUCa -3'
miRNA:   3'- -AGCGGucAGCGUCua------CUCGGCGGCAG- -5'
32781 3' -58.9 NC_007346.1 + 206627 0.66 0.955755
Target:  5'- aCGCCgggaagcAGUCGCGGAUGcGaCCGCaGUg -3'
miRNA:   3'- aGCGG-------UCAGCGUCUACuC-GGCGgCAg -5'
32781 3' -58.9 NC_007346.1 + 221127 0.66 0.952484
Target:  5'- cCGCUGGUauggGCGGu---GCCGCCGUUg -3'
miRNA:   3'- aGCGGUCAg---CGUCuacuCGGCGGCAG- -5'
32781 3' -58.9 NC_007346.1 + 338399 0.66 0.948663
Target:  5'- -aGCaCAGgagauUCGUGGGUGGGCgCGCgCGUCu -3'
miRNA:   3'- agCG-GUC-----AGCGUCUACUCG-GCG-GCAG- -5'
32781 3' -58.9 NC_007346.1 + 182221 0.67 0.916276
Target:  5'- uUUGCCAGUCaaCAGu--AGCCGUCGUUg -3'
miRNA:   3'- -AGCGGUCAGc-GUCuacUCGGCGGCAG- -5'
32781 3' -58.9 NC_007346.1 + 341330 0.67 0.910835
Target:  5'- aCGUUAGUCGUGGcgGAGguaCGCCGg- -3'
miRNA:   3'- aGCGGUCAGCGUCuaCUCg--GCGGCag -5'
32781 3' -58.9 NC_007346.1 + 299218 0.68 0.865148
Target:  5'- aUCGUcugccucucuCAGUCGCAG-UGAGCCaauggaugugcaacGCCGUUu -3'
miRNA:   3'- -AGCG----------GUCAGCGUCuACUCGG--------------CGGCAG- -5'
32781 3' -58.9 NC_007346.1 + 392460 0.69 0.860241
Target:  5'- -aGCCAGUCGCcGAgccagucacUGAGCCaGUCGcCg -3'
miRNA:   3'- agCGGUCAGCGuCU---------ACUCGG-CGGCaG- -5'
32781 3' -58.9 NC_007346.1 + 274786 0.69 0.848705
Target:  5'- gUCGCCAacguucccaagcccGUCGUAacgagcagcucauuGAUaccGAGCCGCUGUCg -3'
miRNA:   3'- -AGCGGU--------------CAGCGU--------------CUA---CUCGGCGGCAG- -5'
32781 3' -58.9 NC_007346.1 + 238720 0.69 0.830601
Target:  5'- nCGCCGGUCGaAGGUGAGCCaCCn-- -3'
miRNA:   3'- aGCGGUCAGCgUCUACUCGGcGGcag -5'
32781 3' -58.9 NC_007346.1 + 392508 0.71 0.764346
Target:  5'- -aGCCAGUCGCcGAgccAGUCGCCGa- -3'
miRNA:   3'- agCGGUCAGCGuCUac-UCGGCGGCag -5'
32781 3' -58.9 NC_007346.1 + 238744 0.95 0.035013
Target:  5'- nCGCCGGUCGaAGAUGAGCCGCCGUCg -3'
miRNA:   3'- aGCGGUCAGCgUCUACUCGGCGGCAG- -5'
32781 3' -58.9 NC_007346.1 + 238697 0.98 0.022757
Target:  5'- gUCGCCAGUCGCAGAUGAG-CGCCGUCg -3'
miRNA:   3'- -AGCGGUCAGCGUCUACUCgGCGGCAG- -5'
32781 3' -58.9 NC_007346.1 + 238769 0.99 0.018565
Target:  5'- aUCGCCGGUCGCAGAUGAGCCGCCaUCg -3'
miRNA:   3'- -AGCGGUCAGCGUCUACUCGGCGGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.