miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32781 5' -51.1 NC_007346.1 + 160222 0.66 0.999924
Target:  5'- aCCGGCAgCGCCGCcgg-UAUCGgaUAUCg -3'
miRNA:   3'- -GGCUGU-GCGGCGaaagAUAGCg-AUGG- -5'
32781 5' -51.1 NC_007346.1 + 311194 0.66 0.999903
Target:  5'- aCCGcCAuuacCGCCGCcaUCUccAUCGCcauUACCg -3'
miRNA:   3'- -GGCuGU----GCGGCGaaAGA--UAGCG---AUGG- -5'
32781 5' -51.1 NC_007346.1 + 98004 0.66 0.999876
Target:  5'- uCCGugcgcuCACGCUGCaaUUUCUGUgGUU-CCg -3'
miRNA:   3'- -GGCu-----GUGCGGCG--AAAGAUAgCGAuGG- -5'
32781 5' -51.1 NC_007346.1 + 257159 0.66 0.999876
Target:  5'- gCCGuguCACGCUGCUcgUCaa--GCUGCUu -3'
miRNA:   3'- -GGCu--GUGCGGCGAa-AGauagCGAUGG- -5'
32781 5' -51.1 NC_007346.1 + 257756 0.66 0.99984
Target:  5'- gCGGCACGCCGgaaa--GUCGCUgagugggACCg -3'
miRNA:   3'- gGCUGUGCGGCgaaagaUAGCGA-------UGG- -5'
32781 5' -51.1 NC_007346.1 + 287501 0.67 0.999753
Target:  5'- uCCGGCauaaACGCCGUUgcaUCguuUCGaaCUACCa -3'
miRNA:   3'- -GGCUG----UGCGGCGAa--AGau-AGC--GAUGG- -5'
32781 5' -51.1 NC_007346.1 + 275139 0.67 0.999693
Target:  5'- --aACACGCCGCaca----CGCUGCCa -3'
miRNA:   3'- ggcUGUGCGGCGaaagauaGCGAUGG- -5'
32781 5' -51.1 NC_007346.1 + 239147 0.67 0.999686
Target:  5'- gCUGACgAUGCCGaa-UCUGUCGauugacaCUACCa -3'
miRNA:   3'- -GGCUG-UGCGGCgaaAGAUAGC-------GAUGG- -5'
32781 5' -51.1 NC_007346.1 + 386215 0.68 0.999429
Target:  5'- cCCGGCaugccaaaacaGCGCCGCUgccccUCGUUACa -3'
miRNA:   3'- -GGCUG-----------UGCGGCGAaagauAGCGAUGg -5'
32781 5' -51.1 NC_007346.1 + 135247 0.68 0.999305
Target:  5'- aCUGGCuucuuUGCCGCcUUCU-UCGCcGCCu -3'
miRNA:   3'- -GGCUGu----GCGGCGaAAGAuAGCGaUGG- -5'
32781 5' -51.1 NC_007346.1 + 244468 0.68 0.999159
Target:  5'- aCGcACGCGCuCGCUUUCUugcaaagcaCGC-ACCa -3'
miRNA:   3'- gGC-UGUGCG-GCGAAAGAua-------GCGaUGG- -5'
32781 5' -51.1 NC_007346.1 + 371202 0.68 0.998987
Target:  5'- cCCGugcCugGCCGagaaUUUGUCGcCUACCa -3'
miRNA:   3'- -GGCu--GugCGGCgaa-AGAUAGC-GAUGG- -5'
32781 5' -51.1 NC_007346.1 + 257883 0.7 0.996729
Target:  5'- aCgGACACGCCGCguagaUUCccgCGCaucUGCCc -3'
miRNA:   3'- -GgCUGUGCGGCGa----AAGauaGCG---AUGG- -5'
32781 5' -51.1 NC_007346.1 + 253296 0.7 0.996198
Target:  5'- uUGGCACGCCGgUUUUugUAUCGacACCg -3'
miRNA:   3'- gGCUGUGCGGCgAAAG--AUAGCgaUGG- -5'
32781 5' -51.1 NC_007346.1 + 78029 0.7 0.995599
Target:  5'- cCCGGCGCGgCGCUUUgaGUUG--GCCa -3'
miRNA:   3'- -GGCUGUGCgGCGAAAgaUAGCgaUGG- -5'
32781 5' -51.1 NC_007346.1 + 349377 0.7 0.994925
Target:  5'- gCCGcCAcCGCCGCcgUC-GUCGCcACCa -3'
miRNA:   3'- -GGCuGU-GCGGCGaaAGaUAGCGaUGG- -5'
32781 5' -51.1 NC_007346.1 + 264100 0.74 0.963368
Target:  5'- aCCGAgACGCCGU---CUAUCGCgucucauuguucccaUACCg -3'
miRNA:   3'- -GGCUgUGCGGCGaaaGAUAGCG---------------AUGG- -5'
32781 5' -51.1 NC_007346.1 + 260709 0.75 0.938504
Target:  5'- gCG-CGCGCCGCUUUUUGcgGCUAUCg -3'
miRNA:   3'- gGCuGUGCGGCGAAAGAUagCGAUGG- -5'
32781 5' -51.1 NC_007346.1 + 238664 1.16 0.010082
Target:  5'- aCCGACACGCCGCUUUCUAUCGCUACCa -3'
miRNA:   3'- -GGCUGUGCGGCGAAAGAUAGCGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.