miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32784 3' -59 NC_007346.1 + 255683 0.66 0.962844
Target:  5'- aGGCAauUGCGGCgGCgGcCGGUGUcCCAa -3'
miRNA:   3'- -CCGU--GCGCUGgCGgCaGCCGUAuGGU- -5'
32784 3' -59 NC_007346.1 + 128296 0.66 0.962844
Target:  5'- cGC-CGCcACCGCCGcCGGguUuACCGu -3'
miRNA:   3'- cCGuGCGcUGGCGGCaGCCguA-UGGU- -5'
32784 3' -59 NC_007346.1 + 86363 0.66 0.962844
Target:  5'- aGGCGCGCGGugaCGuuGUUGGacgagACCu -3'
miRNA:   3'- -CCGUGCGCUg--GCggCAGCCgua--UGGu -5'
32784 3' -59 NC_007346.1 + 207014 0.66 0.961904
Target:  5'- -uUugGUGcAUCGUCGUCGGCAacgaaugggacuuaUGCCAg -3'
miRNA:   3'- ccGugCGC-UGGCGGCAGCCGU--------------AUGGU- -5'
32784 3' -59 NC_007346.1 + 206659 0.66 0.957639
Target:  5'- uGGCGCgauaugcccaggaugGUGACCGCCGUgUGGa--ACCAc -3'
miRNA:   3'- -CCGUG---------------CGCUGGCGGCA-GCCguaUGGU- -5'
32784 3' -59 NC_007346.1 + 87188 0.66 0.943753
Target:  5'- gGGcCGCGCgGGCCGCCGUCuuacugagaccauuGGCcgcACCc -3'
miRNA:   3'- -CC-GUGCG-CUGGCGGCAG--------------CCGua-UGGu -5'
32784 3' -59 NC_007346.1 + 401530 0.67 0.940828
Target:  5'- aGCAgGUGcACCGCCGcCuGCAgcUGCCAu -3'
miRNA:   3'- cCGUgCGC-UGGCGGCaGcCGU--AUGGU- -5'
32784 3' -59 NC_007346.1 + 216580 0.67 0.940828
Target:  5'- uGGCACGCG-CgaaUGUCGGCGUuucGCCGc -3'
miRNA:   3'- -CCGUGCGCuGgcgGCAGCCGUA---UGGU- -5'
32784 3' -59 NC_007346.1 + 274843 0.67 0.931935
Target:  5'- cGCGCGUGACCGCU-UUGGUucgaAUGCUg -3'
miRNA:   3'- cCGUGCGCUGGCGGcAGCCG----UAUGGu -5'
32784 3' -59 NC_007346.1 + 98279 0.67 0.92275
Target:  5'- cGCAgGCG-CCGCCGgcgguucaaaaaacgCGGCAUccugacgaACCAg -3'
miRNA:   3'- cCGUgCGCuGGCGGCa--------------GCCGUA--------UGGU- -5'
32784 3' -59 NC_007346.1 + 256513 0.67 0.917105
Target:  5'- cGCGauCGCGACUGCCGUaacuUGGaCGUACUu -3'
miRNA:   3'- cCGU--GCGCUGGCGGCA----GCC-GUAUGGu -5'
32784 3' -59 NC_007346.1 + 44138 0.67 0.917105
Target:  5'- cGGCGCGCG-CUGCUG-CGauGCAUGCgCGa -3'
miRNA:   3'- -CCGUGCGCuGGCGGCaGC--CGUAUG-GU- -5'
32784 3' -59 NC_007346.1 + 216142 0.68 0.911764
Target:  5'- cGGCG-GCGAaaCGCCGacauUCGcGCGUGCCAc -3'
miRNA:   3'- -CCGUgCGCUg-GCGGC----AGC-CGUAUGGU- -5'
32784 3' -59 NC_007346.1 + 238051 0.68 0.906226
Target:  5'- uGGCGCGCG-UUGCCGU-GGUGcACCGu -3'
miRNA:   3'- -CCGUGCGCuGGCGGCAgCCGUaUGGU- -5'
32784 3' -59 NC_007346.1 + 239309 0.7 0.833045
Target:  5'- uGGUAUGcCGACgGCgGUCG-CGUGCCGg -3'
miRNA:   3'- -CCGUGC-GCUGgCGgCAGCcGUAUGGU- -5'
32784 3' -59 NC_007346.1 + 257777 0.7 0.833045
Target:  5'- uGGCGCaGUGAUCaaaGCCGggCGGCAcGCCGg -3'
miRNA:   3'- -CCGUG-CGCUGG---CGGCa-GCCGUaUGGU- -5'
32784 3' -59 NC_007346.1 + 386650 0.7 0.809619
Target:  5'- gGGCA-GCGG-CGCUGUuuuUGGCAUGCCGg -3'
miRNA:   3'- -CCGUgCGCUgGCGGCA---GCCGUAUGGU- -5'
32784 3' -59 NC_007346.1 + 221131 0.73 0.668754
Target:  5'- uGGUAUggGCGguGCCGCCGUUGGCGcACCc -3'
miRNA:   3'- -CCGUG--CGC--UGGCGGCAGCCGUaUGGu -5'
32784 3' -59 NC_007346.1 + 78861 0.84 0.180054
Target:  5'- uGGCGCGCGACCGCCGUCuuuuGGUcccauauacuuuuuuGUACCGg -3'
miRNA:   3'- -CCGUGCGCUGGCGGCAG----CCG---------------UAUGGU- -5'
32784 3' -59 NC_007346.1 + 239741 1.1 0.004238
Target:  5'- cGGCACGCGACCGCCGUCGGCAUACCAc -3'
miRNA:   3'- -CCGUGCGCUGGCGGCAGCCGUAUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.