miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32785 3' -54.2 NC_007346.1 + 258897 0.66 0.997477
Target:  5'- -uUGGUUGACGcGuCCGAGCguggGUCgCGa -3'
miRNA:   3'- guACUAACUGCuCuGGCUCGa---CGG-GC- -5'
32785 3' -54.2 NC_007346.1 + 201461 0.66 0.997051
Target:  5'- --cGAUUG-CGucGCCGGGCguUGCCUGg -3'
miRNA:   3'- guaCUAACuGCucUGGCUCG--ACGGGC- -5'
32785 3' -54.2 NC_007346.1 + 380631 0.66 0.997051
Target:  5'- -cUGAUUGGaaaGAGGCCGGGUauucuggacuUGCCg- -3'
miRNA:   3'- guACUAACUg--CUCUGGCUCG----------ACGGgc -5'
32785 3' -54.2 NC_007346.1 + 110145 0.66 0.996568
Target:  5'- aCGUGGUggcUGACGGGuCUGuguacGCUGUCCa -3'
miRNA:   3'- -GUACUA---ACUGCUCuGGCu----CGACGGGc -5'
32785 3' -54.2 NC_007346.1 + 202515 0.67 0.993603
Target:  5'- cCGUGGUggagucgauuacgGAUGuGACCGA-CUGCCCu -3'
miRNA:   3'- -GUACUAa------------CUGCuCUGGCUcGACGGGc -5'
32785 3' -54.2 NC_007346.1 + 229944 0.67 0.992115
Target:  5'- aAUGuaUGACGgaucguuaucAGAgaGAGCUGCCCGu -3'
miRNA:   3'- gUACuaACUGC----------UCUggCUCGACGGGC- -5'
32785 3' -54.2 NC_007346.1 + 269528 0.68 0.982143
Target:  5'- --aGAUUGACGAGACCGAcaacaCCGa -3'
miRNA:   3'- guaCUAACUGCUCUGGCUcgacgGGC- -5'
32785 3' -54.2 NC_007346.1 + 249074 0.69 0.967787
Target:  5'- -uUGGUUGAUGcGuCCGAGCgugGCUCGa -3'
miRNA:   3'- guACUAACUGCuCuGGCUCGa--CGGGC- -5'
32785 3' -54.2 NC_007346.1 + 255649 0.71 0.946704
Target:  5'- ------cGACGAGAUCGGGCaGCUCGg -3'
miRNA:   3'- guacuaaCUGCUCUGGCUCGaCGGGC- -5'
32785 3' -54.2 NC_007346.1 + 256136 0.71 0.942471
Target:  5'- cCGUGAUUGACGAGACa---CaGCCCGc -3'
miRNA:   3'- -GUACUAACUGCUCUGgcucGaCGGGC- -5'
32785 3' -54.2 NC_007346.1 + 256172 0.71 0.933366
Target:  5'- cCGUGAUUGACGAGACa---CaGCCCGu -3'
miRNA:   3'- -GUACUAACUGCUCUGgcucGaCGGGC- -5'
32785 3' -54.2 NC_007346.1 + 256235 0.72 0.918635
Target:  5'- --cGAUUGACGAGACCGuGauugacgagacacaGCCCGu -3'
miRNA:   3'- guaCUAACUGCUCUGGCuCga------------CGGGC- -5'
32785 3' -54.2 NC_007346.1 + 243437 0.74 0.838378
Target:  5'- -uUGAUUGACGcGuCCGAGCgugGCUCGa -3'
miRNA:   3'- guACUAACUGCuCuGGCUCGa--CGGGC- -5'
32785 3' -54.2 NC_007346.1 + 256091 1.09 0.011369
Target:  5'- cCAUGAUUGACGAGACCGAGCUGCCCGa -3'
miRNA:   3'- -GUACUAACUGCUCUGGCUCGACGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.