miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32787 3' -44.8 NC_007346.1 + 118628 0.66 1
Target:  5'- aAUGAGCGAAUGGAcaga--CGUUGAa -3'
miRNA:   3'- cUACUCGUUUGCCUuauaagGUAGCU- -5'
32787 3' -44.8 NC_007346.1 + 215997 0.66 1
Target:  5'- -uUGGGCAuuCGGGuggaUCCGUCGc -3'
miRNA:   3'- cuACUCGUuuGCCUuauaAGGUAGCu -5'
32787 3' -44.8 NC_007346.1 + 140763 0.66 1
Target:  5'- --gGAGUgaacuAAACGGuacaaauccacGUGUUCCAUCGAc -3'
miRNA:   3'- cuaCUCG-----UUUGCCu----------UAUAAGGUAGCU- -5'
32787 3' -44.8 NC_007346.1 + 92491 0.66 1
Target:  5'- aGUG-GCGAugGGAGUAaaucucCCAUUGAu -3'
miRNA:   3'- cUACuCGUUugCCUUAUaa----GGUAGCU- -5'
32787 3' -44.8 NC_007346.1 + 260664 0.67 1
Target:  5'- --cGAcaAAACGGAAUAUUCaAUCGAg -3'
miRNA:   3'- cuaCUcgUUUGCCUUAUAAGgUAGCU- -5'
32787 3' -44.8 NC_007346.1 + 255131 0.68 1
Target:  5'- --gGAGCAaugagacgcGAgGGAAUAUUCCcUUGAu -3'
miRNA:   3'- cuaCUCGU---------UUgCCUUAUAAGGuAGCU- -5'
32787 3' -44.8 NC_007346.1 + 241176 0.66 1
Target:  5'- --cGAGCGGAUGGAuuauUGUUgUAUUGGg -3'
miRNA:   3'- cuaCUCGUUUGCCUu---AUAAgGUAGCU- -5'
32787 3' -44.8 NC_007346.1 + 121427 0.66 1
Target:  5'- -uUGAGCAuuGGCGuAAUAU-CUAUCGAa -3'
miRNA:   3'- cuACUCGU--UUGCcUUAUAaGGUAGCU- -5'
32787 3' -44.8 NC_007346.1 + 308548 0.66 1
Target:  5'- --gGAGCAGGCGGggUGgagCaggCGGa -3'
miRNA:   3'- cuaCUCGUUUGCCuuAUaa-GguaGCU- -5'
32787 3' -44.8 NC_007346.1 + 242219 0.67 1
Target:  5'- gGAUGG--AAACGGAAUcgggaAUUCCGUCGu -3'
miRNA:   3'- -CUACUcgUUUGCCUUA-----UAAGGUAGCu -5'
32787 3' -44.8 NC_007346.1 + 149947 0.68 1
Target:  5'- cGGUGAGCAAcauaccgcuucgccgGCGGcAUucucGUUCCGUCa- -3'
miRNA:   3'- -CUACUCGUU---------------UGCCuUA----UAAGGUAGcu -5'
32787 3' -44.8 NC_007346.1 + 327614 0.7 0.999998
Target:  5'- --aGGGgAGAucUGGAaaGUAUUCCAUCGAg -3'
miRNA:   3'- cuaCUCgUUU--GCCU--UAUAAGGUAGCU- -5'
32787 3' -44.8 NC_007346.1 + 384724 0.7 0.999997
Target:  5'- --aGuGC-AACGGAGUAaucauUUCCAUCGGg -3'
miRNA:   3'- cuaCuCGuUUGCCUUAU-----AAGGUAGCU- -5'
32787 3' -44.8 NC_007346.1 + 287616 0.72 0.999925
Target:  5'- -cUGAGaUAAACGGAcAUGUUCCAUUGc -3'
miRNA:   3'- cuACUC-GUUUGCCU-UAUAAGGUAGCu -5'
32787 3' -44.8 NC_007346.1 + 263124 0.81 0.95675
Target:  5'- cGAUGAaCcaccaacccgAAACGGAAUAUUCCAUCGAg -3'
miRNA:   3'- -CUACUcG----------UUUGCCUUAUAAGGUAGCU- -5'
32787 3' -44.8 NC_007346.1 + 259370 1.11 0.069472
Target:  5'- uGAUGAGCAAACGGAAUAUUCCAUCGAg -3'
miRNA:   3'- -CUACUCGUUUGCCUUAUAAGGUAGCU- -5'
32787 3' -44.8 NC_007346.1 + 258601 1.11 0.069472
Target:  5'- uGAUGAGCAAACGGAAUAUUCCAUCGAg -3'
miRNA:   3'- -CUACUCGUUUGCCUUAUAAGGUAGCU- -5'
32787 3' -44.8 NC_007346.1 + 257256 1.11 0.069472
Target:  5'- uGAUGAGCAAACGGAAUAUUCCAUCGAg -3'
miRNA:   3'- -CUACUCGUUUGCCUUAUAAGGUAGCU- -5'
32787 3' -44.8 NC_007346.1 + 257994 1.11 0.069472
Target:  5'- uGAUGAGCAAACGGAAUAUUCCAUCGAg -3'
miRNA:   3'- -CUACUCGUUUGCCUUAUAAGGUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.