Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32787 | 5' | -58.3 | NC_007346.1 | + | 86437 | 0.68 | 0.916555 |
Target: 5'- gUUCGCGGugagcgcaUCACGCUCGGcCGCcUCg -3' miRNA: 3'- aGAGCGCUg-------GGUGCGAGCCaGCGuAG- -5' |
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32787 | 5' | -58.3 | NC_007346.1 | + | 87696 | 0.68 | 0.916555 |
Target: 5'- aCUCGCuuUUCGCGCUCGaGUCG-AUCa -3' miRNA: 3'- aGAGCGcuGGGUGCGAGC-CAGCgUAG- -5' |
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32787 | 5' | -58.3 | NC_007346.1 | + | 242998 | 0.83 | 0.240133 |
Target: 5'- aUCUCuCGAgCCACGCUCGGaCGCGUCa -3' miRNA: 3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5' |
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32787 | 5' | -58.3 | NC_007346.1 | + | 244286 | 0.68 | 0.926764 |
Target: 5'- aCUauaaGCGAacCCCGCaCUCGGUCaCAUCa -3' miRNA: 3'- aGAg---CGCU--GGGUGcGAGCCAGcGUAG- -5' |
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32787 | 5' | -58.3 | NC_007346.1 | + | 246371 | 0.76 | 0.534564 |
Target: 5'- aUCUCuCGAgCCACGCUCGGaCGCAc- -3' miRNA: 3'- -AGAGcGCUgGGUGCGAGCCaGCGUag -5' |
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32787 | 5' | -58.3 | NC_007346.1 | + | 249460 | 0.68 | 0.916555 |
Target: 5'- aUCUCGCGAUCguaaaAUGCUCGGagaugaaaaguaUCGCGg- -3' miRNA: 3'- -AGAGCGCUGGg----UGCGAGCC------------AGCGUag -5' |
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32787 | 5' | -58.3 | NC_007346.1 | + | 249513 | 0.83 | 0.219545 |
Target: 5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3' miRNA: 3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5' |
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32787 | 5' | -58.3 | NC_007346.1 | + | 250893 | 0.83 | 0.219545 |
Target: 5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3' miRNA: 3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5' |
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32787 | 5' | -58.3 | NC_007346.1 | + | 251548 | 0.71 | 0.807705 |
Target: 5'- aUUCaaaCGAgCCACGUUCGGaCGCAUCa -3' miRNA: 3'- aGAGc--GCUgGGUGCGAGCCaGCGUAG- -5' |
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32787 | 5' | -58.3 | NC_007346.1 | + | 252832 | 0.83 | 0.219545 |
Target: 5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3' miRNA: 3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5' |
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32787 | 5' | -58.3 | NC_007346.1 | + | 253603 | 0.83 | 0.219545 |
Target: 5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3' miRNA: 3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5' |
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32787 | 5' | -58.3 | NC_007346.1 | + | 254336 | 0.83 | 0.219545 |
Target: 5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3' miRNA: 3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5' |
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32787 | 5' | -58.3 | NC_007346.1 | + | 255447 | 0.83 | 0.219545 |
Target: 5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3' miRNA: 3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5' |
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32787 | 5' | -58.3 | NC_007346.1 | + | 255633 | 0.66 | 0.967587 |
Target: 5'- uUCUcCGCGAgagaCCCGacgagaucgggcaGCUCGGUCuCGUCa -3' miRNA: 3'- -AGA-GCGCU----GGGUg------------CGAGCCAGcGUAG- -5' |
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32787 | 5' | -58.3 | NC_007346.1 | + | 256368 | 0.83 | 0.219545 |
Target: 5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3' miRNA: 3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5' |
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32787 | 5' | -58.3 | NC_007346.1 | + | 257222 | 1.1 | 0.00444 |
Target: 5'- aUCUCGCGACCCACGCUCGGUCGCAUCa -3' miRNA: 3'- -AGAGCGCUGGGUGCGAGCCAGCGUAG- -5' |
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32787 | 5' | -58.3 | NC_007346.1 | + | 257960 | 1.1 | 0.00444 |
Target: 5'- aUCUCGCGACCCACGCUCGGUCGCAUCa -3' miRNA: 3'- -AGAGCGCUGGGUGCGAGCCAGCGUAG- -5' |
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32787 | 5' | -58.3 | NC_007346.1 | + | 258567 | 0.87 | 0.134788 |
Target: 5'- aUCUCGCGAgCCACGCUCGGaCGCAg- -3' miRNA: 3'- -AGAGCGCUgGGUGCGAGCCaGCGUag -5' |
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32787 | 5' | -58.3 | NC_007346.1 | + | 259192 | 0.66 | 0.956161 |
Target: 5'- gCUCGCGACaCCAUGCU-GaUUGCGUa -3' miRNA: 3'- aGAGCGCUG-GGUGCGAgCcAGCGUAg -5' |
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32787 | 5' | -58.3 | NC_007346.1 | + | 259336 | 1.01 | 0.017579 |
Target: 5'- aUCUCGCGACCCACGCUCGGaCGCGUCa -3' miRNA: 3'- -AGAGCGCUGGGUGCGAGCCaGCGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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