Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32788 | 3' | -51.5 | NC_007346.1 | + | 91165 | 0.69 | 0.996201 |
Target: 5'- aGGAUGGGAUCCauuaaGACaGgGGGUaUCUGa -3' miRNA: 3'- -UCUAUCUUAGGg----CUGcCgCCUA-AGAC- -5' |
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32788 | 3' | -51.5 | NC_007346.1 | + | 135553 | 0.68 | 0.998567 |
Target: 5'- ---cGGua--CCGACGGCGGAgaaUCUGg -3' miRNA: 3'- ucuaUCuuagGGCUGCCGCCUa--AGAC- -5' |
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32788 | 3' | -51.5 | NC_007346.1 | + | 171248 | 0.66 | 0.999761 |
Target: 5'- uGGUAGAccgCgaGGCGGUGGAcuUUCUGa -3' miRNA: 3'- uCUAUCUua-GggCUGCCGCCU--AAGAC- -5' |
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32788 | 3' | -51.5 | NC_007346.1 | + | 188002 | 0.67 | 0.999002 |
Target: 5'- gGGGUGGGGg--CGACGGCGGAUg--- -3' miRNA: 3'- -UCUAUCUUaggGCUGCCGCCUAagac -5' |
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32788 | 3' | -51.5 | NC_007346.1 | + | 257360 | 1.09 | 0.022307 |
Target: 5'- gAGAUAGAAUCCCGACGGCGGAUUCUGu -3' miRNA: 3'- -UCUAUCUUAGGGCUGCCGCCUAAGAC- -5' |
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32788 | 3' | -51.5 | NC_007346.1 | + | 258098 | 1.09 | 0.022307 |
Target: 5'- gAGAUAGAAUCCCGACGGCGGAUUCUGu -3' miRNA: 3'- -UCUAUCUUAGGGCUGCCGCCUAAGAC- -5' |
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32788 | 3' | -51.5 | NC_007346.1 | + | 258704 | 1.09 | 0.022307 |
Target: 5'- gAGAUAGAAUCCCGACGGCGGAUUCUGu -3' miRNA: 3'- -UCUAUCUUAGGGCUGCCGCCUAAGAC- -5' |
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32788 | 3' | -51.5 | NC_007346.1 | + | 259475 | 1.09 | 0.022307 |
Target: 5'- gAGAUAGAAUCCCGACGGCGGAUUCUGu -3' miRNA: 3'- -UCUAUCUUAGGGCUGCCGCCUAAGAC- -5' |
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32788 | 3' | -51.5 | NC_007346.1 | + | 259612 | 1.09 | 0.022307 |
Target: 5'- gAGAUAGAAUCCCGACGGCGGAUUCUGu -3' miRNA: 3'- -UCUAUCUUAGGGCUGCCGCCUAAGAC- -5' |
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32788 | 3' | -51.5 | NC_007346.1 | + | 292176 | 0.66 | 0.999761 |
Target: 5'- cGGGUAuGGcugcCCCGGUGGCGGGUUCg- -3' miRNA: 3'- -UCUAU-CUua--GGGCUGCCGCCUAAGac -5' |
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32788 | 3' | -51.5 | NC_007346.1 | + | 306209 | 0.68 | 0.998567 |
Target: 5'- cGGUGGAGUCgCCGGUGGUGGAg---- -3' miRNA: 3'- uCUAUCUUAG-GGCUGCCGCCUaagac -5' |
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32788 | 3' | -51.5 | NC_007346.1 | + | 307914 | 0.68 | 0.998296 |
Target: 5'- cGGUGGGGgcaCCGGCGGUGGAgguaaUGg -3' miRNA: 3'- uCUAUCUUag-GGCUGCCGCCUaag--AC- -5' |
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32788 | 3' | -51.5 | NC_007346.1 | + | 308714 | 0.68 | 0.998296 |
Target: 5'- cGGUGGGGgcaCCGGCGGUGGAgguaaUGg -3' miRNA: 3'- uCUAUCUUag-GGCUGCCGCCUaag--AC- -5' |
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32788 | 3' | -51.5 | NC_007346.1 | + | 310273 | 0.67 | 0.999441 |
Target: 5'- uGGUGGGggCaauggCGGCGGCGGAUUUg- -3' miRNA: 3'- uCUAUCUuaGg----GCUGCCGCCUAAGac -5' |
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32788 | 3' | -51.5 | NC_007346.1 | + | 402050 | 0.66 | 0.999838 |
Target: 5'- gAGAUAGAacaaaugcaccacuAUCCCGACGGa--GUUCa- -3' miRNA: 3'- -UCUAUCU--------------UAGGGCUGCCgccUAAGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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