Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32789 | 5' | -52.4 | NC_007346.1 | + | 257822 | 1.07 | 0.022725 |
Target: 5'- gAACGCAAUCCGCCACGAGAUUACGCGu -3' miRNA: 3'- -UUGCGUUAGGCGGUGCUCUAAUGCGC- -5' |
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32789 | 5' | -52.4 | NC_007346.1 | + | 253540 | 0.79 | 0.678709 |
Target: 5'- aAugGCcaccuucUCCGCgCGCGAGAUUGCGCGa -3' miRNA: 3'- -UugCGuu-----AGGCG-GUGCUCUAAUGCGC- -5' |
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32789 | 5' | -52.4 | NC_007346.1 | + | 254642 | 0.77 | 0.764574 |
Target: 5'- aGACGCcuuaaucgCCGCCuucucugcgcGCGAGAUUGCGCGa -3' miRNA: 3'- -UUGCGuua-----GGCGG----------UGCUCUAAUGCGC- -5' |
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32789 | 5' | -52.4 | NC_007346.1 | + | 130771 | 0.7 | 0.985611 |
Target: 5'- cAUGCGAa-CGuCCACGAGGUUAUGCa -3' miRNA: 3'- uUGCGUUagGC-GGUGCUCUAAUGCGc -5' |
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32789 | 5' | -52.4 | NC_007346.1 | + | 44138 | 0.69 | 0.988617 |
Target: 5'- cGGCGCGcgCUGCUGCGAuGcaUGCGCGa -3' miRNA: 3'- -UUGCGUuaGGCGGUGCU-CuaAUGCGC- -5' |
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32789 | 5' | -52.4 | NC_007346.1 | + | 274600 | 0.69 | 0.989925 |
Target: 5'- gGACGCAAgaaCGCgagCGCGAGAUUAC-CGa -3' miRNA: 3'- -UUGCGUUag-GCG---GUGCUCUAAUGcGC- -5' |
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32789 | 5' | -52.4 | NC_007346.1 | + | 255090 | 0.68 | 0.994802 |
Target: 5'- cGCGCAAUCuCGCgCGCaGAGAagGCgGCGa -3' miRNA: 3'- uUGCGUUAG-GCG-GUG-CUCUaaUG-CGC- -5' |
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32789 | 5' | -52.4 | NC_007346.1 | + | 86454 | 0.68 | 0.996113 |
Target: 5'- cACGCucggCCGCCuCGAGGUggACGUa -3' miRNA: 3'- uUGCGuua-GGCGGuGCUCUAa-UGCGc -5' |
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32789 | 5' | -52.4 | NC_007346.1 | + | 257390 | 0.67 | 0.996659 |
Target: 5'- cGCGUAAUCuCGUgGCG-GAUUGCGUu -3' miRNA: 3'- uUGCGUUAG-GCGgUGCuCUAAUGCGc -5' |
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32789 | 5' | -52.4 | NC_007346.1 | + | 265723 | 0.67 | 0.998251 |
Target: 5'- gGACGCAG-CCGCgCGCG-GAUUAUuaGCa -3' miRNA: 3'- -UUGCGUUaGGCG-GUGCuCUAAUG--CGc -5' |
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32789 | 5' | -52.4 | NC_007346.1 | + | 260225 | 0.66 | 0.99863 |
Target: 5'- gAGCGC-GUCCgugGCCACGAGAagaaauaccgggucgUcgUGCGCGc -3' miRNA: 3'- -UUGCGuUAGG---CGGUGCUCU---------------A--AUGCGC- -5' |
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32789 | 5' | -52.4 | NC_007346.1 | + | 54163 | 0.66 | 0.999425 |
Target: 5'- uACGCAucguuUuuGCCAUGAGuucaGCGCa -3' miRNA: 3'- uUGCGUu----AggCGGUGCUCuaa-UGCGc -5' |
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32789 | 5' | -52.4 | NC_007346.1 | + | 274074 | 0.66 | 0.999425 |
Target: 5'- uGACGCGaugcGUCCGUauuuCGAcGggUGCGCGa -3' miRNA: 3'- -UUGCGU----UAGGCGgu--GCU-CuaAUGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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