miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32791 3' -51.5 NC_007346.1 + 402050 0.66 0.999838
Target:  5'- gAGAUAGAacaaaugcaccacuAUCCCGACGGa--GUUCa- -3'
miRNA:   3'- -UCUAUCU--------------UAGGGCUGCCgccUAAGac -5'
32791 3' -51.5 NC_007346.1 + 292176 0.66 0.999761
Target:  5'- cGGGUAuGGcugcCCCGGUGGCGGGUUCg- -3'
miRNA:   3'- -UCUAU-CUua--GGGCUGCCGCCUAAGac -5'
32791 3' -51.5 NC_007346.1 + 171248 0.66 0.999761
Target:  5'- uGGUAGAccgCgaGGCGGUGGAcuUUCUGa -3'
miRNA:   3'- uCUAUCUua-GggCUGCCGCCU--AAGAC- -5'
32791 3' -51.5 NC_007346.1 + 310273 0.67 0.999441
Target:  5'- uGGUGGGggCaauggCGGCGGCGGAUUUg- -3'
miRNA:   3'- uCUAUCUuaGg----GCUGCCGCCUAAGac -5'
32791 3' -51.5 NC_007346.1 + 188002 0.67 0.999002
Target:  5'- gGGGUGGGGg--CGACGGCGGAUg--- -3'
miRNA:   3'- -UCUAUCUUaggGCUGCCGCCUAagac -5'
32791 3' -51.5 NC_007346.1 + 306209 0.68 0.998567
Target:  5'- cGGUGGAGUCgCCGGUGGUGGAg---- -3'
miRNA:   3'- uCUAUCUUAG-GGCUGCCGCCUaagac -5'
32791 3' -51.5 NC_007346.1 + 135553 0.68 0.998567
Target:  5'- ---cGGua--CCGACGGCGGAgaaUCUGg -3'
miRNA:   3'- ucuaUCuuagGGCUGCCGCCUa--AGAC- -5'
32791 3' -51.5 NC_007346.1 + 307914 0.68 0.998296
Target:  5'- cGGUGGGGgcaCCGGCGGUGGAgguaaUGg -3'
miRNA:   3'- uCUAUCUUag-GGCUGCCGCCUaag--AC- -5'
32791 3' -51.5 NC_007346.1 + 308714 0.68 0.998296
Target:  5'- cGGUGGGGgcaCCGGCGGUGGAgguaaUGg -3'
miRNA:   3'- uCUAUCUUag-GGCUGCCGCCUaag--AC- -5'
32791 3' -51.5 NC_007346.1 + 91165 0.69 0.996201
Target:  5'- aGGAUGGGAUCCauuaaGACaGgGGGUaUCUGa -3'
miRNA:   3'- -UCUAUCUUAGGg----CUGcCgCCUA-AGAC- -5'
32791 3' -51.5 NC_007346.1 + 259612 1.09 0.022307
Target:  5'- gAGAUAGAAUCCCGACGGCGGAUUCUGu -3'
miRNA:   3'- -UCUAUCUUAGGGCUGCCGCCUAAGAC- -5'
32791 3' -51.5 NC_007346.1 + 259475 1.09 0.022307
Target:  5'- gAGAUAGAAUCCCGACGGCGGAUUCUGu -3'
miRNA:   3'- -UCUAUCUUAGGGCUGCCGCCUAAGAC- -5'
32791 3' -51.5 NC_007346.1 + 258704 1.09 0.022307
Target:  5'- gAGAUAGAAUCCCGACGGCGGAUUCUGu -3'
miRNA:   3'- -UCUAUCUUAGGGCUGCCGCCUAAGAC- -5'
32791 3' -51.5 NC_007346.1 + 258098 1.09 0.022307
Target:  5'- gAGAUAGAAUCCCGACGGCGGAUUCUGu -3'
miRNA:   3'- -UCUAUCUUAGGGCUGCCGCCUAAGAC- -5'
32791 3' -51.5 NC_007346.1 + 257360 1.09 0.022307
Target:  5'- gAGAUAGAAUCCCGACGGCGGAUUCUGu -3'
miRNA:   3'- -UCUAUCUUAGGGCUGCCGCCUAAGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.