Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32793 | 3' | -49 | NC_007346.1 | + | 187284 | 0.66 | 0.99998 |
Target: 5'- gGUgGcgGaGCCACUGCGggaggUGUUGGUGc -3' miRNA: 3'- -CGgUuaC-CGGUGGCGCa----AUAAUCAUu -5' |
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32793 | 3' | -49 | NC_007346.1 | + | 396570 | 0.66 | 0.99998 |
Target: 5'- aCCAAUGucuauacCCACUGCGUauaUGUUGGUGu -3' miRNA: 3'- cGGUUACc------GGUGGCGCA---AUAAUCAUu -5' |
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32793 | 3' | -49 | NC_007346.1 | + | 128539 | 0.67 | 0.999937 |
Target: 5'- uGCaGAUGGCgGCgGUGgaGUUGGUGAu -3' miRNA: 3'- -CGgUUACCGgUGgCGCaaUAAUCAUU- -5' |
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32793 | 3' | -49 | NC_007346.1 | + | 182606 | 0.68 | 0.99972 |
Target: 5'- -aCAAUGGaCACUGCGUUccaguaGUUAGUAc -3' miRNA: 3'- cgGUUACCgGUGGCGCAA------UAAUCAUu -5' |
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32793 | 3' | -49 | NC_007346.1 | + | 239393 | 0.68 | 0.99972 |
Target: 5'- uCCAuguUGGCCAUUGUGUUug-GGUGAu -3' miRNA: 3'- cGGUu--ACCGGUGGCGCAAuaaUCAUU- -5' |
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32793 | 3' | -49 | NC_007346.1 | + | 239285 | 0.68 | 0.99972 |
Target: 5'- uCCAuguUGGCCAUUGUGUUug-GGUGAu -3' miRNA: 3'- cGGUu--ACCGGUGGCGCAAuaaUCAUU- -5' |
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32793 | 3' | -49 | NC_007346.1 | + | 50207 | 0.68 | 0.99972 |
Target: 5'- uGCCA---GCCACCGCGUUAa------ -3' miRNA: 3'- -CGGUuacCGGUGGCGCAAUaaucauu -5' |
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32793 | 3' | -49 | NC_007346.1 | + | 200637 | 0.68 | 0.999777 |
Target: 5'- cGgUGAUGGCgAUgGUGUUGUUGGUGGa -3' miRNA: 3'- -CgGUUACCGgUGgCGCAAUAAUCAUU- -5' |
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32793 | 3' | -49 | NC_007346.1 | + | 122549 | 0.68 | 0.999825 |
Target: 5'- gGCC-AUGGCCAauGCGgcGUUGGg-- -3' miRNA: 3'- -CGGuUACCGGUggCGCaaUAAUCauu -5' |
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32793 | 3' | -49 | NC_007346.1 | + | 167397 | 0.69 | 0.99946 |
Target: 5'- uUCAAUgaGGCCACCGCGaUUGUaugcaaauUGGUGGa -3' miRNA: 3'- cGGUUA--CCGGUGGCGC-AAUA--------AUCAUU- -5' |
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32793 | 3' | -49 | NC_007346.1 | + | 367210 | 0.7 | 0.998808 |
Target: 5'- cGCCAGUGGagugUACCGC--UGUUGGUAc -3' miRNA: 3'- -CGGUUACCg---GUGGCGcaAUAAUCAUu -5' |
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32793 | 3' | -49 | NC_007346.1 | + | 21837 | 0.71 | 0.996643 |
Target: 5'- gGCCAAUgcaGGCCACaauggCGCGUgcgUGGUAGu -3' miRNA: 3'- -CGGUUA---CCGGUG-----GCGCAauaAUCAUU- -5' |
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32793 | 3' | -49 | NC_007346.1 | + | 277092 | 0.75 | 0.958224 |
Target: 5'- aGCCAAUGGCgACUGgGUUAUUAu--- -3' miRNA: 3'- -CGGUUACCGgUGGCgCAAUAAUcauu -5' |
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32793 | 3' | -49 | NC_007346.1 | + | 67413 | 0.79 | 0.837977 |
Target: 5'- uUCAAUGGCCACCGUGUUGUUc---- -3' miRNA: 3'- cGGUUACCGGUGGCGCAAUAAucauu -5' |
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32793 | 3' | -49 | NC_007346.1 | + | 260769 | 1.1 | 0.027609 |
Target: 5'- cGCCAAUGGCCACCGCGUUAUUAGUAAa -3' miRNA: 3'- -CGGUUACCGGUGGCGCAAUAAUCAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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