Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32794 | 3' | -51.4 | NC_007346.1 | + | 97622 | 0.67 | 0.99905 |
Target: 5'- aAGUACuGGCCGuACGAUGGaAUCGGa- -3' miRNA: 3'- gUCAUGuUUGGU-UGCUGCC-UGGCCau -5' |
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32794 | 3' | -51.4 | NC_007346.1 | + | 111980 | 0.66 | 0.99972 |
Target: 5'- uGGUGCGugaguagUCAugGGCGGcACUGGUAg -3' miRNA: 3'- gUCAUGUuu-----GGUugCUGCC-UGGCCAU- -5' |
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32794 | 3' | -51.4 | NC_007346.1 | + | 160664 | 0.67 | 0.999184 |
Target: 5'- -uGUGCAucgauauccgauACCGGCGGCGcuGCCGGUAc -3' miRNA: 3'- guCAUGUu-----------UGGUUGCUGCc-UGGCCAU- -5' |
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32794 | 3' | -51.4 | NC_007346.1 | + | 200796 | 0.69 | 0.994328 |
Target: 5'- aCGGUGgAGGCggCggUGACGGAaCCGGUGa -3' miRNA: 3'- -GUCAUgUUUG--GuuGCUGCCU-GGCCAU- -5' |
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32794 | 3' | -51.4 | NC_007346.1 | + | 221568 | 0.7 | 0.989107 |
Target: 5'- gGGUGC--GCCAACGGCGGcACCGc-- -3' miRNA: 3'- gUCAUGuuUGGUUGCUGCC-UGGCcau -5' |
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32794 | 3' | -51.4 | NC_007346.1 | + | 237866 | 0.66 | 0.999652 |
Target: 5'- aAGUAacCAGauGCgGGCGAUGcGGCCGGUAc -3' miRNA: 3'- gUCAU--GUU--UGgUUGCUGC-CUGGCCAU- -5' |
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32794 | 3' | -51.4 | NC_007346.1 | + | 239309 | 0.71 | 0.986189 |
Target: 5'- uGGUAU--GCCGACGGCGGucgcguGCCGGa- -3' miRNA: 3'- gUCAUGuuUGGUUGCUGCC------UGGCCau -5' |
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32794 | 3' | -51.4 | NC_007346.1 | + | 255687 | 0.67 | 0.999214 |
Target: 5'- gAGgagGCAAuugCGGCGGCGG-CCGGUGu -3' miRNA: 3'- gUCa--UGUUug-GUUGCUGCCuGGCCAU- -5' |
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32794 | 3' | -51.4 | NC_007346.1 | + | 261580 | 1.07 | 0.026515 |
Target: 5'- aCAGUACAAACCAACGACGGACCGGUAu -3' miRNA: 3'- -GUCAUGUUUGGUUGCUGCCUGGCCAU- -5' |
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32794 | 3' | -51.4 | NC_007346.1 | + | 297887 | 0.67 | 0.999471 |
Target: 5'- gGGUAC-AACCAACaaguACGGACgGGa- -3' miRNA: 3'- gUCAUGuUUGGUUGc---UGCCUGgCCau -5' |
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32794 | 3' | -51.4 | NC_007346.1 | + | 304901 | 0.68 | 0.997714 |
Target: 5'- gGGUACGGACUucCGugGGGgguggccacucCCGGUGg -3' miRNA: 3'- gUCAUGUUUGGuuGCugCCU-----------GGCCAU- -5' |
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32794 | 3' | -51.4 | NC_007346.1 | + | 307178 | 0.66 | 0.999822 |
Target: 5'- gCGGUGgAcuuGGCggCGGCGACGGGCUGGg- -3' miRNA: 3'- -GUCAUgU---UUG--GUUGCUGCCUGGCCau -5' |
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32794 | 3' | -51.4 | NC_007346.1 | + | 361080 | 0.66 | 0.999796 |
Target: 5'- aUAGUGgcGACCAGuCGACGGuaucgcauagauauCCGGUAu -3' miRNA: 3'- -GUCAUguUUGGUU-GCUGCCu-------------GGCCAU- -5' |
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32794 | 3' | -51.4 | NC_007346.1 | + | 371299 | 0.66 | 0.999822 |
Target: 5'- --aUACAGcAUCGACGACG-ACCGGUu -3' miRNA: 3'- gucAUGUU-UGGUUGCUGCcUGGCCAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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