miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32796 3' -53.1 NC_007346.1 + 201146 0.66 0.997784
Target:  5'- cGGUGCAGAUGGUG-GUGCaga-UGGUa -3'
miRNA:   3'- -UUACGUCUGUCACgCGCGguuaACCG- -5'
32796 3' -53.1 NC_007346.1 + 189452 0.66 0.997784
Target:  5'- uGGUGguGACGGUGgugGCGgCGAcgguggUGGCg -3'
miRNA:   3'- -UUACguCUGUCACg--CGCgGUUa-----ACCG- -5'
32796 3' -53.1 NC_007346.1 + 266665 0.66 0.997784
Target:  5'- cAUGUGGACAGUGCGgUGgCuc--GGCa -3'
miRNA:   3'- uUACGUCUGUCACGC-GCgGuuaaCCG- -5'
32796 3' -53.1 NC_007346.1 + 248636 0.66 0.997784
Target:  5'- --aGguGACuGGUGCGU-CCGAgagUGGCu -3'
miRNA:   3'- uuaCguCUG-UCACGCGcGGUUa--ACCG- -5'
32796 3' -53.1 NC_007346.1 + 246740 0.66 0.996936
Target:  5'- --aGUGGAUGGUGCGC-CCGGUggaccgcaUGGUg -3'
miRNA:   3'- uuaCGUCUGUCACGCGcGGUUA--------ACCG- -5'
32796 3' -53.1 NC_007346.1 + 79808 0.66 0.996421
Target:  5'- -uUGguGGCGGUGgaacaugugcUGCGCCAGcaUGGUg -3'
miRNA:   3'- uuACguCUGUCAC----------GCGCGGUUa-ACCG- -5'
32796 3' -53.1 NC_007346.1 + 61126 0.66 0.996421
Target:  5'- --gGCGGAggaggUGGUGaugGCGCCGGUgaUGGCg -3'
miRNA:   3'- uuaCGUCU-----GUCACg--CGCGGUUA--ACCG- -5'
32796 3' -53.1 NC_007346.1 + 56750 0.66 0.995837
Target:  5'- gGAUGCuGGCGGUG-GCGgUGAU-GGCg -3'
miRNA:   3'- -UUACGuCUGUCACgCGCgGUUAaCCG- -5'
32796 3' -53.1 NC_007346.1 + 54799 0.67 0.995177
Target:  5'- --cGCAcACAGUGUGCGUCAAUUu-- -3'
miRNA:   3'- uuaCGUcUGUCACGCGCGGUUAAccg -5'
32796 3' -53.1 NC_007346.1 + 171661 0.67 0.994434
Target:  5'- --cGCcGACA-UGCGuCGCCAAagGGCu -3'
miRNA:   3'- uuaCGuCUGUcACGC-GCGGUUaaCCG- -5'
32796 3' -53.1 NC_007346.1 + 238490 0.67 0.992574
Target:  5'- cGUGUuGACGGUgcaccacggcaacGCGCGCCAAaggGGUc -3'
miRNA:   3'- uUACGuCUGUCA-------------CGCGCGGUUaa-CCG- -5'
32796 3' -53.1 NC_007346.1 + 310713 0.68 0.989228
Target:  5'- --cGCAGGCGGUGUGgGUgGGcUUGGg -3'
miRNA:   3'- uuaCGUCUGUCACGCgCGgUU-AACCg -5'
32796 3' -53.1 NC_007346.1 + 66483 0.68 0.987834
Target:  5'- -uUGUuGGCGGUGCGCGCauuuUAAaUGGUa -3'
miRNA:   3'- uuACGuCUGUCACGCGCG----GUUaACCG- -5'
32796 3' -53.1 NC_007346.1 + 79283 0.69 0.978682
Target:  5'- -----cGGCGGUcGCGCGCCAAUUcGCg -3'
miRNA:   3'- uuacguCUGUCA-CGCGCGGUUAAcCG- -5'
32796 3' -53.1 NC_007346.1 + 266557 0.69 0.973862
Target:  5'- -cUGCAGGCAGUGUgGCGgCuc--GGCa -3'
miRNA:   3'- uuACGUCUGUCACG-CGCgGuuaaCCG- -5'
32796 3' -53.1 NC_007346.1 + 61192 0.7 0.968296
Target:  5'- --gGCGGA-GGUG-GCGCCGGUgaUGGCg -3'
miRNA:   3'- uuaCGUCUgUCACgCGCGGUUA--ACCG- -5'
32796 3' -53.1 NC_007346.1 + 221132 0.7 0.95082
Target:  5'- --gGUauGGGCGGUGC-CGCCG-UUGGCg -3'
miRNA:   3'- uuaCG--UCUGUCACGcGCGGUuAACCG- -5'
32796 3' -53.1 NC_007346.1 + 266774 0.7 0.95082
Target:  5'- cAAUGCAGACAGUGCG-GC-----GGCu -3'
miRNA:   3'- -UUACGUCUGUCACGCgCGguuaaCCG- -5'
32796 3' -53.1 NC_007346.1 + 86733 0.71 0.932901
Target:  5'- --gGCGGAgGGUGCG-GCCAAU-GGUc -3'
miRNA:   3'- uuaCGUCUgUCACGCgCGGUUAaCCG- -5'
32796 3' -53.1 NC_007346.1 + 266505 0.71 0.927854
Target:  5'- cGAUGCAGACAGUGUG-GUgGuucGGCa -3'
miRNA:   3'- -UUACGUCUGUCACGCgCGgUuaaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.