Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32796 | 5' | -43.3 | NC_007346.1 | + | 5917 | 0.7 | 0.999999 |
Target: 5'- aUUGCCGcacGUUUGUugGUUgaUGCUGUUCg -3' miRNA: 3'- -AACGGUu--UAGACAugUAG--AUGAUAAG- -5' |
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32796 | 5' | -43.3 | NC_007346.1 | + | 80952 | 0.75 | 0.999457 |
Target: 5'- aUGCCGAGU-UGUAUaaauggaaGUCUGCUGUUCa -3' miRNA: 3'- aACGGUUUAgACAUG--------UAGAUGAUAAG- -5' |
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32796 | 5' | -43.3 | NC_007346.1 | + | 100883 | 0.69 | 1 |
Target: 5'- uUUGCCGAGagagcuUCUGUGCGuUCUGCa---- -3' miRNA: 3'- -AACGGUUU------AGACAUGU-AGAUGauaag -5' |
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32796 | 5' | -43.3 | NC_007346.1 | + | 103845 | 0.66 | 1 |
Target: 5'- aUGCCAuAUa-GUACAUCUACa---- -3' miRNA: 3'- aACGGUuUAgaCAUGUAGAUGauaag -5' |
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32796 | 5' | -43.3 | NC_007346.1 | + | 105810 | 0.74 | 0.999902 |
Target: 5'- cUUGCUAcaAAUCUGUACAUCcACUuuUUCg -3' miRNA: 3'- -AACGGU--UUAGACAUGUAGaUGAu-AAG- -5' |
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32796 | 5' | -43.3 | NC_007346.1 | + | 158911 | 0.7 | 1 |
Target: 5'- aUGCCAAAUauaUGUACuaaUugUAUUCa -3' miRNA: 3'- aACGGUUUAg--ACAUGuagAugAUAAG- -5' |
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32796 | 5' | -43.3 | NC_007346.1 | + | 160675 | 0.71 | 0.999998 |
Target: 5'- gUUGCCGuAUCUGUGCAUCga-UAUcCg -3' miRNA: 3'- -AACGGUuUAGACAUGUAGaugAUAaG- -5' |
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32796 | 5' | -43.3 | NC_007346.1 | + | 239140 | 0.66 | 1 |
Target: 5'- aUGCCGAAUCUGUcgauugACA-CUACca-UCa -3' miRNA: 3'- aACGGUUUAGACA------UGUaGAUGauaAG- -5' |
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32796 | 5' | -43.3 | NC_007346.1 | + | 266306 | 1.09 | 0.101007 |
Target: 5'- uUUGCCAAAUCUGUACAUCUACUAUUCu -3' miRNA: 3'- -AACGGUUUAGACAUGUAGAUGAUAAG- -5' |
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32796 | 5' | -43.3 | NC_007346.1 | + | 289002 | 0.66 | 1 |
Target: 5'- cUGCCAGAUCaccaccaccacccccUGCGUUUGCUAUUa -3' miRNA: 3'- aACGGUUUAGac-------------AUGUAGAUGAUAAg -5' |
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32796 | 5' | -43.3 | NC_007346.1 | + | 295404 | 0.66 | 1 |
Target: 5'- aUGCCAAAUUUGgcacCAUCUGuCcAUUCc -3' miRNA: 3'- aACGGUUUAGACau--GUAGAU-GaUAAG- -5' |
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32796 | 5' | -43.3 | NC_007346.1 | + | 304453 | 0.67 | 1 |
Target: 5'- aUUGCCAuGUCcacuuaaaUGUACAgcucCUGCUGUUa -3' miRNA: 3'- -AACGGUuUAG--------ACAUGUa---GAUGAUAAg -5' |
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32796 | 5' | -43.3 | NC_007346.1 | + | 373736 | 0.66 | 1 |
Target: 5'- -gGCCAAGcuUCgcaGUACAagUACUAUUUa -3' miRNA: 3'- aaCGGUUU--AGa--CAUGUagAUGAUAAG- -5' |
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32796 | 5' | -43.3 | NC_007346.1 | + | 386491 | 0.68 | 1 |
Target: 5'- cUGCCA--UCUGUGCGacuUUUGCUucAUUCu -3' miRNA: 3'- aACGGUuuAGACAUGU---AGAUGA--UAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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