Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32797 | 3' | -52.9 | NC_007346.1 | + | 367829 | 0.66 | 0.999349 |
Target: 5'- -aGCUCGCCGgucUUCUUAUAUgACGUgGa -3' miRNA: 3'- ggCGGGUGGU---AAGAGUAUGgUGCAgC- -5' |
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32797 | 3' | -52.9 | NC_007346.1 | + | 368072 | 0.66 | 0.999349 |
Target: 5'- -aGCUCGCCGgucUUCUUAUAUgACGUgGa -3' miRNA: 3'- ggCGGGUGGU---AAGAGUAUGgUGCAgC- -5' |
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32797 | 3' | -52.9 | NC_007346.1 | + | 368315 | 0.66 | 0.999349 |
Target: 5'- -aGCUCGCCGgucUUCUUAUAUgACGUgGa -3' miRNA: 3'- ggCGGGUGGU---AAGAGUAUGgUGCAgC- -5' |
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32797 | 3' | -52.9 | NC_007346.1 | + | 368557 | 0.66 | 0.999349 |
Target: 5'- -aGCUCGCCGgucUUCUUAUAUgACGUgGa -3' miRNA: 3'- ggCGGGUGGU---AAGAGUAUGgUGCAgC- -5' |
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32797 | 3' | -52.9 | NC_007346.1 | + | 386754 | 0.66 | 0.999052 |
Target: 5'- --uUCCACCuuuuuAUUCUCAU-CCACGUUGu -3' miRNA: 3'- ggcGGGUGG-----UAAGAGUAuGGUGCAGC- -5' |
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32797 | 3' | -52.9 | NC_007346.1 | + | 275819 | 0.66 | 0.99898 |
Target: 5'- uUGCCCGCCAccacaacacggcgUCUCAUucaaacccgGCgGCGUCu -3' miRNA: 3'- gGCGGGUGGUa------------AGAGUA---------UGgUGCAGc -5' |
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32797 | 3' | -52.9 | NC_007346.1 | + | 406283 | 0.66 | 0.998864 |
Target: 5'- aCGCCCACgCAcgagCGUACCcccagaguauGCGUCGu -3' miRNA: 3'- gGCGGGUG-GUaagaGUAUGG----------UGCAGC- -5' |
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32797 | 3' | -52.9 | NC_007346.1 | + | 115608 | 0.66 | 0.999465 |
Target: 5'- -gGCCCACCAUUUUuugcuucgaauaCAUACCcagcacCGUCu -3' miRNA: 3'- ggCGGGUGGUAAGA------------GUAUGGu-----GCAGc -5' |
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32797 | 3' | -52.9 | NC_007346.1 | + | 309726 | 0.67 | 0.998099 |
Target: 5'- cCUGcCCCACCAccgccUUCUCcaccuccacccaAUGCCcCGUCGc -3' miRNA: 3'- -GGC-GGGUGGU-----AAGAG------------UAUGGuGCAGC- -5' |
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32797 | 3' | -52.9 | NC_007346.1 | + | 98704 | 0.67 | 0.997653 |
Target: 5'- aCCGCCgGcggcgccugcgagcCCGUUCUugaCGUggcccACCGCGUCGg -3' miRNA: 3'- -GGCGGgU--------------GGUAAGA---GUA-----UGGUGCAGC- -5' |
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32797 | 3' | -52.9 | NC_007346.1 | + | 292771 | 0.67 | 0.998099 |
Target: 5'- gUCGCCC-CCGUUCacguUCGgaUACCGgGUCu -3' miRNA: 3'- -GGCGGGuGGUAAG----AGU--AUGGUgCAGc -5' |
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32797 | 3' | -52.9 | NC_007346.1 | + | 208846 | 0.67 | 0.998548 |
Target: 5'- aCCGCCCACCuguuguccccgCUCcuggagACCACGcugCGc -3' miRNA: 3'- -GGCGGGUGGuaa--------GAGua----UGGUGCa--GC- -5' |
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32797 | 3' | -52.9 | NC_007346.1 | + | 25033 | 0.67 | 0.997379 |
Target: 5'- aCGCUCGCgAUUUUCAcgUGCC-CGUUGu -3' miRNA: 3'- gGCGGGUGgUAAGAGU--AUGGuGCAGC- -5' |
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32797 | 3' | -52.9 | NC_007346.1 | + | 274761 | 0.68 | 0.996445 |
Target: 5'- gCCGCCaCGCuCAgccgUCGUGCC-CGUCGc -3' miRNA: 3'- -GGCGG-GUG-GUaag-AGUAUGGuGCAGC- -5' |
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32797 | 3' | -52.9 | NC_007346.1 | + | 95320 | 0.68 | 0.996445 |
Target: 5'- uUGuCCUACCAUUCUCGU-CCAUGa-- -3' miRNA: 3'- gGC-GGGUGGUAAGAGUAuGGUGCagc -5' |
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32797 | 3' | -52.9 | NC_007346.1 | + | 212118 | 0.68 | 0.995253 |
Target: 5'- gUGUCCACaaacgaAUUCgUCAUACCAUgGUCGg -3' miRNA: 3'- gGCGGGUGg-----UAAG-AGUAUGGUG-CAGC- -5' |
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32797 | 3' | -52.9 | NC_007346.1 | + | 51000 | 0.68 | 0.996445 |
Target: 5'- gCUGCUCGCCAUUC-CGguggACCgAUGUCu -3' miRNA: 3'- -GGCGGGUGGUAAGaGUa---UGG-UGCAGc -5' |
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32797 | 3' | -52.9 | NC_007346.1 | + | 187547 | 0.68 | 0.995253 |
Target: 5'- aCCGCCCucaccaccgccGCCGUcgcCUCAU-CCGcCGUCGc -3' miRNA: 3'- -GGCGGG-----------UGGUAa--GAGUAuGGU-GCAGC- -5' |
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32797 | 3' | -52.9 | NC_007346.1 | + | 312106 | 0.69 | 0.989629 |
Target: 5'- gUGCUCACaacaucUUCUCAUGCC-CGUCa -3' miRNA: 3'- gGCGGGUGgu----AAGAGUAUGGuGCAGc -5' |
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32797 | 3' | -52.9 | NC_007346.1 | + | 273730 | 0.69 | 0.991898 |
Target: 5'- uUCGCCCAUCuUUCgcaCGUACUuuuugcuaACGUCGg -3' miRNA: 3'- -GGCGGGUGGuAAGa--GUAUGG--------UGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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