Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32797 | 5' | -48.7 | NC_007346.1 | + | 238583 | 0.66 | 0.999995 |
Target: 5'- gCGCGAUGUaaaaGuCgUUUGCGAugucAAGCUGGg -3' miRNA: 3'- -GCGCUGCA----CuG-AAACGCUu---UUCGACU- -5' |
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32797 | 5' | -48.7 | NC_007346.1 | + | 338429 | 0.67 | 0.999976 |
Target: 5'- aGCuGGuCGUGGCUgucUUGCGGGAccaguuguGGCUGGu -3' miRNA: 3'- gCG-CU-GCACUGA---AACGCUUU--------UCGACU- -5' |
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32797 | 5' | -48.7 | NC_007346.1 | + | 392080 | 0.67 | 0.999958 |
Target: 5'- gGCGAC-UGGCUcgGCGAcuGGCUc- -3' miRNA: 3'- gCGCUGcACUGAaaCGCUuuUCGAcu -5' |
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32797 | 5' | -48.7 | NC_007346.1 | + | 198852 | 0.68 | 0.999928 |
Target: 5'- gGCGGCGaUGGCg--GCGggGuGGUUGGu -3' miRNA: 3'- gCGCUGC-ACUGaaaCGCuuU-UCGACU- -5' |
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32797 | 5' | -48.7 | NC_007346.1 | + | 262616 | 0.69 | 0.999805 |
Target: 5'- aGgGAacugGUGGCgagUUGCGGAGuuGGCUGAu -3' miRNA: 3'- gCgCUg---CACUGa--AACGCUUU--UCGACU- -5' |
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32797 | 5' | -48.7 | NC_007346.1 | + | 256758 | 0.69 | 0.999805 |
Target: 5'- aGgGAacugGUGGCgagUUGCGGAGuuGGCUGAu -3' miRNA: 3'- gCgCUg---CACUGa--AACGCUUU--UCGACU- -5' |
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32797 | 5' | -48.7 | NC_007346.1 | + | 272616 | 0.7 | 0.999416 |
Target: 5'- gGCGACGUGugUUucgGCGAcgacgguGGaCUGAu -3' miRNA: 3'- gCGCUGCACugAAa--CGCUuu-----UC-GACU- -5' |
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32797 | 5' | -48.7 | NC_007346.1 | + | 255443 | 0.73 | 0.993714 |
Target: 5'- aGCGAU-UGGCcuugGCGAAAAGCUGGc -3' miRNA: 3'- gCGCUGcACUGaaa-CGCUUUUCGACU- -5' |
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32797 | 5' | -48.7 | NC_007346.1 | + | 87338 | 0.73 | 0.990614 |
Target: 5'- gCGCGGCGUccauaGACcccgUUGCaAGGAGCUGAg -3' miRNA: 3'- -GCGCUGCA-----CUGa---AACGcUUUUCGACU- -5' |
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32797 | 5' | -48.7 | NC_007346.1 | + | 270193 | 1.1 | 0.031906 |
Target: 5'- uCGCGACGUGACUUUGCGAAAAGCUGAg -3' miRNA: 3'- -GCGCUGCACUGAAACGCUUUUCGACU- -5' |
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32797 | 5' | -48.7 | NC_007346.1 | + | 309747 | 0.74 | 0.987955 |
Target: 5'- gGUGGCGgugGACUUgguggcgGCGAcgGGCUGGg -3' miRNA: 3'- gCGCUGCa--CUGAAa------CGCUuuUCGACU- -5' |
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32797 | 5' | -48.7 | NC_007346.1 | + | 307182 | 0.74 | 0.987955 |
Target: 5'- gGUGGCGgugGACUUggcggcgGCGAcgGGCUGGg -3' miRNA: 3'- gCGCUGCa--CUGAAa------CGCUuuUCGACU- -5' |
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32797 | 5' | -48.7 | NC_007346.1 | + | 188075 | 0.68 | 0.999928 |
Target: 5'- gGCGGCGUgGGCggcgGCGgAGGAGgUGAg -3' miRNA: 3'- gCGCUGCA-CUGaaa-CGC-UUUUCgACU- -5' |
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32797 | 5' | -48.7 | NC_007346.1 | + | 188042 | 0.66 | 0.99999 |
Target: 5'- gGCGGCGUGggcgGCggUGgGGAGGGCg-- -3' miRNA: 3'- gCGCUGCAC----UGaaACgCUUUUCGacu -5' |
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32797 | 5' | -48.7 | NC_007346.1 | + | 188108 | 0.66 | 0.999996 |
Target: 5'- gGCGGCGgugggGACggUG-GAGGAGgUGAg -3' miRNA: 3'- gCGCUGCa----CUGaaACgCUUUUCgACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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