Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32798 | 3' | -54.2 | NC_007346.1 | + | 399132 | 0.7 | 0.969832 |
Target: 5'- cCCGAAACACauugcugaaGCGUCGCCugauuaaACCUGAa-- -3' miRNA: 3'- -GGCUUUGUG---------UGCAGCGG-------UGGGCUgcu -5' |
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32798 | 3' | -54.2 | NC_007346.1 | + | 348092 | 0.73 | 0.901739 |
Target: 5'- gCGAAuauuaGCAagaGUCaGCCACCCGAUGAg -3' miRNA: 3'- gGCUUug---UGUg--CAG-CGGUGGGCUGCU- -5' |
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32798 | 3' | -54.2 | NC_007346.1 | + | 234504 | 0.74 | 0.883147 |
Target: 5'- gCCGGcuGAguCGCGUCGCCcCCCGGCc- -3' miRNA: 3'- -GGCU--UUguGUGCAGCGGuGGGCUGcu -5' |
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32798 | 3' | -54.2 | NC_007346.1 | + | 340727 | 0.68 | 0.993542 |
Target: 5'- -aGAAACAUAUGUgG-UGCCCGAUGAu -3' miRNA: 3'- ggCUUUGUGUGCAgCgGUGGGCUGCU- -5' |
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32798 | 3' | -54.2 | NC_007346.1 | + | 45624 | 0.68 | 0.989397 |
Target: 5'- gUGAAAU-CAUGUCGCCAacaCCGGCa- -3' miRNA: 3'- gGCUUUGuGUGCAGCGGUg--GGCUGcu -5' |
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32798 | 3' | -54.2 | NC_007346.1 | + | 39947 | 0.69 | 0.984112 |
Target: 5'- cCCGAgggccccaaacgugcAACACGCGUUGCCAUgcuucucauugUCGGCGc -3' miRNA: 3'- -GGCU---------------UUGUGUGCAGCGGUG-----------GGCUGCu -5' |
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32798 | 3' | -54.2 | NC_007346.1 | + | 251765 | 0.66 | 0.998279 |
Target: 5'- -aGAAACACACucuacaaCGCCGCCgaauuUGACGGa -3' miRNA: 3'- ggCUUUGUGUGca-----GCGGUGG-----GCUGCU- -5' |
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32798 | 3' | -54.2 | NC_007346.1 | + | 304523 | 0.66 | 0.99825 |
Target: 5'- aCCGAAACACAgCGcccgcugguuuaaUCGCCAUguaGAUGAc -3' miRNA: 3'- -GGCUUUGUGU-GC-------------AGCGGUGgg-CUGCU- -5' |
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32798 | 3' | -54.2 | NC_007346.1 | + | 372550 | 0.67 | 0.996273 |
Target: 5'- aCGAGAUGCaccuaGCGUCGCCAUgguaguuaGACGAg -3' miRNA: 3'- gGCUUUGUG-----UGCAGCGGUGgg------CUGCU- -5' |
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32798 | 3' | -54.2 | NC_007346.1 | + | 260710 | 0.67 | 0.996273 |
Target: 5'- cUCG-GACGCGCGUCGCCcaACUCGcCa- -3' miRNA: 3'- -GGCuUUGUGUGCAGCGG--UGGGCuGcu -5' |
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32798 | 3' | -54.2 | NC_007346.1 | + | 284699 | 0.68 | 0.991672 |
Target: 5'- aCUGGAcgcgcCACugGacgCGCCACUgGACGAa -3' miRNA: 3'- -GGCUUu----GUGugCa--GCGGUGGgCUGCU- -5' |
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32798 | 3' | -54.2 | NC_007346.1 | + | 239052 | 0.7 | 0.975189 |
Target: 5'- aCGAGAUGCACGacaCGCCAUCUGAgcUGAu -3' miRNA: 3'- gGCUUUGUGUGCa--GCGGUGGGCU--GCU- -5' |
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32798 | 3' | -54.2 | NC_007346.1 | + | 203039 | 0.67 | 0.996782 |
Target: 5'- aUGAAAUGCACGUaaUGCCAUgUGACa- -3' miRNA: 3'- gGCUUUGUGUGCA--GCGGUGgGCUGcu -5' |
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32798 | 3' | -54.2 | NC_007346.1 | + | 273608 | 0.7 | 0.97748 |
Target: 5'- gCCGGGcacuuguuGCACuugauUGUCGCgCACCCGuCGAa -3' miRNA: 3'- -GGCUU--------UGUGu----GCAGCG-GUGGGCuGCU- -5' |
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32798 | 3' | -54.2 | NC_007346.1 | + | 54372 | 0.67 | 0.995701 |
Target: 5'- uUGAGGCGCGCGUUGCaCGCaCgGGCc- -3' miRNA: 3'- gGCUUUGUGUGCAGCG-GUG-GgCUGcu -5' |
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32798 | 3' | -54.2 | NC_007346.1 | + | 231073 | 0.66 | 0.997975 |
Target: 5'- cCCG-AACAa--GUUGCCA-CCGACGGa -3' miRNA: 3'- -GGCuUUGUgugCAGCGGUgGGCUGCU- -5' |
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32798 | 3' | -54.2 | NC_007346.1 | + | 273902 | 0.69 | 0.979612 |
Target: 5'- uCCG-AGCACuCGUCGUugucgCACuuGACGAg -3' miRNA: 3'- -GGCuUUGUGuGCAGCG-----GUGggCUGCU- -5' |
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32798 | 3' | -54.2 | NC_007346.1 | + | 337955 | 0.71 | 0.964315 |
Target: 5'- uCCcAGACGCGCG-CGcCCACCC-ACGAa -3' miRNA: 3'- -GGcUUUGUGUGCaGC-GGUGGGcUGCU- -5' |
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32798 | 3' | -54.2 | NC_007346.1 | + | 361507 | 0.75 | 0.833234 |
Target: 5'- aCCGucg-ACugGUCGCCAcuauucCCCGACGAa -3' miRNA: 3'- -GGCuuugUGugCAGCGGU------GGGCUGCU- -5' |
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32798 | 3' | -54.2 | NC_007346.1 | + | 235995 | 0.72 | 0.923704 |
Target: 5'- -gGGAGUACACGUCGugcgguaauCCACCCGugGGu -3' miRNA: 3'- ggCUUUGUGUGCAGC---------GGUGGGCugCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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