miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32799 3' -56.3 NC_007346.1 + 308836 0.66 0.983185
Target:  5'- gAUGGCGGUGGAgaugGCGGUGGagaUGGCg -3'
miRNA:   3'- gUGCCGCCGUUUa---UGCCGCUgg-GUCG- -5'
32799 3' -56.3 NC_007346.1 + 308800 0.66 0.983185
Target:  5'- gAUGGCGGUGGAgaugGCGGUGGagaUGGCg -3'
miRNA:   3'- gUGCCGCCGUUUa---UGCCGCUgg-GUCG- -5'
32799 3' -56.3 NC_007346.1 + 308501 0.66 0.983185
Target:  5'- gAUGGCGGUGGAgaugGCGGUGGagaUGGCg -3'
miRNA:   3'- gUGCCGCCGUUUa---UGCCGCUgg-GUCG- -5'
32799 3' -56.3 NC_007346.1 + 308228 0.66 0.983185
Target:  5'- gAUGGCGGUGGAgaugGCGGUGGagaUGGCg -3'
miRNA:   3'- gUGCCGCCGUUUa---UGCCGCUgg-GUCG- -5'
32799 3' -56.3 NC_007346.1 + 307694 0.66 0.983185
Target:  5'- gAUGGCGGUGGAgaugGCGGUGGagaUGGCg -3'
miRNA:   3'- gUGCCGCCGUUUa---UGCCGCUgg-GUCG- -5'
32799 3' -56.3 NC_007346.1 + 307422 0.66 0.983185
Target:  5'- gAUGGCGGUGGAgaugGCGGUGGagaUGGCg -3'
miRNA:   3'- gUGCCGCCGUUUa---UGCCGCUgg-GUCG- -5'
32799 3' -56.3 NC_007346.1 + 83157 0.66 0.981326
Target:  5'- cUACGGCcauGGCAcuggGCGGUGgACCCAa- -3'
miRNA:   3'- -GUGCCG---CCGUuua-UGCCGC-UGGGUcg -5'
32799 3' -56.3 NC_007346.1 + 310017 0.66 0.981326
Target:  5'- gAUGGCGGUGGAgaugGCGGUGGa--GGCa -3'
miRNA:   3'- gUGCCGCCGUUUa---UGCCGCUgggUCG- -5'
32799 3' -56.3 NC_007346.1 + 308465 0.66 0.981326
Target:  5'- gAUGGCGGUGGAgaugGCGGUGGa--GGCa -3'
miRNA:   3'- gUGCCGCCGUUUa---UGCCGCUgggUCG- -5'
32799 3' -56.3 NC_007346.1 + 308192 0.66 0.981326
Target:  5'- gAUGGCGGUGGAgaugGCGGUGGa--GGCa -3'
miRNA:   3'- gUGCCGCCGUUUa---UGCCGCUgggUCG- -5'
32799 3' -56.3 NC_007346.1 + 307988 0.66 0.981326
Target:  5'- gAUGGCGGUGGAgaugGCGGUGGa--GGCa -3'
miRNA:   3'- gUGCCGCCGUUUa---UGCCGCUgggUCG- -5'
32799 3' -56.3 NC_007346.1 + 307658 0.66 0.981326
Target:  5'- gAUGGCGGUGGAgaugGCGGUGGa--GGCa -3'
miRNA:   3'- gUGCCGCCGUUUa---UGCCGCUgggUCG- -5'
32799 3' -56.3 NC_007346.1 + 306229 0.67 0.979317
Target:  5'- gAUGGCGGUGGAggagaugGCGGUGGagucgCCGGUg -3'
miRNA:   3'- gUGCCGCCGUUUa------UGCCGCUg----GGUCG- -5'
32799 3' -56.3 NC_007346.1 + 343027 0.67 0.979317
Target:  5'- aUugGcGCGGUucGUACGGU-ACCCGGg -3'
miRNA:   3'- -GugC-CGCCGuuUAUGCCGcUGGGUCg -5'
32799 3' -56.3 NC_007346.1 + 368726 0.67 0.979317
Target:  5'- --aGGCGGCGaugGAUGCGGCaaacaaACUCAaGCa -3'
miRNA:   3'- gugCCGCCGU---UUAUGCCGc-----UGGGU-CG- -5'
32799 3' -56.3 NC_007346.1 + 330032 0.67 0.979317
Target:  5'- aCACccCGGguGGaACGGCGugCCGGUa -3'
miRNA:   3'- -GUGccGCCguUUaUGCCGCugGGUCG- -5'
32799 3' -56.3 NC_007346.1 + 180735 0.67 0.977152
Target:  5'- gACGGUGG-AGGUGauggaGGUGuACCCGGUg -3'
miRNA:   3'- gUGCCGCCgUUUAUg----CCGC-UGGGUCG- -5'
32799 3' -56.3 NC_007346.1 + 308081 0.67 0.974824
Target:  5'- gGCGGUGGUGGAUugGGUGGa--GGUg -3'
miRNA:   3'- gUGCCGCCGUUUAugCCGCUgggUCG- -5'
32799 3' -56.3 NC_007346.1 + 200645 0.67 0.974824
Target:  5'- gGCGGUGGCGGugAUGGCGAU--GGUg -3'
miRNA:   3'- gUGCCGCCGUUuaUGCCGCUGggUCG- -5'
32799 3' -56.3 NC_007346.1 + 292354 0.67 0.974824
Target:  5'- aACGGgGGCGAcguuucuuugcUugGGUGGCCaCAGUu -3'
miRNA:   3'- gUGCCgCCGUUu----------AugCCGCUGG-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.