Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32800 | 5' | -55.7 | NC_007346.1 | + | 51017 | 0.66 | 0.987706 |
Target: 5'- -uUCCaAGCUCGAGAaggGCuGCuCGCCa -3' miRNA: 3'- cuAGGcUCGAGCUCUga-CGcUG-GUGG- -5' |
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32800 | 5' | -55.7 | NC_007346.1 | + | 165135 | 0.69 | 0.952907 |
Target: 5'- --aCCGAGCgCGAGAUugcagugGCGACUcaACCa -3' miRNA: 3'- cuaGGCUCGaGCUCUGa------CGCUGG--UGG- -5' |
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32800 | 5' | -55.7 | NC_007346.1 | + | 234809 | 0.67 | 0.982893 |
Target: 5'- cAUCCGAGUgauuaccauuUCGAaacccaACUGCGAUUACCc -3' miRNA: 3'- cUAGGCUCG----------AGCUc-----UGACGCUGGUGG- -5' |
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32800 | 5' | -55.7 | NC_007346.1 | + | 238901 | 0.66 | 0.993328 |
Target: 5'- --aCCcAGUUCGAgGACU-CGAUCACCg -3' miRNA: 3'- cuaGGcUCGAGCU-CUGAcGCUGGUGG- -5' |
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32800 | 5' | -55.7 | NC_007346.1 | + | 239092 | 0.66 | 0.987706 |
Target: 5'- -uUCCGAGCaccuggccacCGAGuuUGaugaGACCACCa -3' miRNA: 3'- cuAGGCUCGa---------GCUCugACg---CUGGUGG- -5' |
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32800 | 5' | -55.7 | NC_007346.1 | + | 239772 | 0.7 | 0.9363 |
Target: 5'- cGGUuuGAGCaccgcgcgCGGGAUUgaaauccggcacGCGACCGCCg -3' miRNA: 3'- -CUAggCUCGa-------GCUCUGA------------CGCUGGUGG- -5' |
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32800 | 5' | -55.7 | NC_007346.1 | + | 243427 | 0.7 | 0.931632 |
Target: 5'- cGUCCGAGCguggcucgaGAGAUUGUGAUCucCCa -3' miRNA: 3'- cUAGGCUCGag-------CUCUGACGCUGGu-GG- -5' |
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32800 | 5' | -55.7 | NC_007346.1 | + | 249084 | 0.7 | 0.931632 |
Target: 5'- cGUCCGAGCguggcucgaGAGAUUGUGAUCucCCa -3' miRNA: 3'- cUAGGCUCGag-------CUCUGACGCUGGu-GG- -5' |
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32800 | 5' | -55.7 | NC_007346.1 | + | 252404 | 0.7 | 0.931632 |
Target: 5'- cGUCCGAGCguggcucgaGAGAUUGUGAUCucCCa -3' miRNA: 3'- cUAGGCUCGag-------CUCUGACGCUGGu-GG- -5' |
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32800 | 5' | -55.7 | NC_007346.1 | + | 253174 | 0.7 | 0.931632 |
Target: 5'- cGUCCGAGCguggcucgaGAGAUUGUGAUCucCCa -3' miRNA: 3'- cUAGGCUCGag-------CUCUGACGCUGGu-GG- -5' |
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32800 | 5' | -55.7 | NC_007346.1 | + | 253907 | 0.7 | 0.931632 |
Target: 5'- cGUCCGAGCguggcucgaGAGAUUGUGAUCucCCa -3' miRNA: 3'- cUAGGCUCGag-------CUCUGACGCUGGu-GG- -5' |
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32800 | 5' | -55.7 | NC_007346.1 | + | 255018 | 0.7 | 0.931632 |
Target: 5'- cGUCCGAGCguggcucgaGAGAUUGUGAUCucCCa -3' miRNA: 3'- cUAGGCUCGag-------CUCUGACGCUGGu-GG- -5' |
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32800 | 5' | -55.7 | NC_007346.1 | + | 255939 | 0.7 | 0.931632 |
Target: 5'- cGUCCGAGCguggcucgaGAGAUUGUGAUCucCCa -3' miRNA: 3'- cUAGGCUCGag-------CUCUGACGCUGGu-GG- -5' |
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32800 | 5' | -55.7 | NC_007346.1 | + | 256270 | 0.67 | 0.982893 |
Target: 5'- cGAUCuCGAGgaCGAGAUUGacgaGACacaGCCc -3' miRNA: 3'- -CUAG-GCUCgaGCUCUGACg---CUGg--UGG- -5' |
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32800 | 5' | -55.7 | NC_007346.1 | + | 256795 | 0.71 | 0.910868 |
Target: 5'- --aCCGAGCgugggucgCGAGAUUGUGACC-UCg -3' miRNA: 3'- cuaGGCUCGa-------GCUCUGACGCUGGuGG- -5' |
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32800 | 5' | -55.7 | NC_007346.1 | + | 257533 | 0.71 | 0.910868 |
Target: 5'- --aCCGAGCgugggucgCGAGAUUGUGACC-UCg -3' miRNA: 3'- cuaGGCUCGa-------GCUCUGACGCUGGuGG- -5' |
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32800 | 5' | -55.7 | NC_007346.1 | + | 258138 | 0.71 | 0.910868 |
Target: 5'- cGUCCGAGCguggcucgCGAGAUUGUGAUC-UCg -3' miRNA: 3'- cUAGGCUCGa-------GCUCUGACGCUGGuGG- -5' |
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32800 | 5' | -55.7 | NC_007346.1 | + | 258907 | 0.75 | 0.707425 |
Target: 5'- cGUCCGAGCgugggucgCGAGAUUGUGACC-UCg -3' miRNA: 3'- cUAGGCUCGa-------GCUCUGACGCUGGuGG- -5' |
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32800 | 5' | -55.7 | NC_007346.1 | + | 259973 | 0.71 | 0.880291 |
Target: 5'- --aCCGAGCgugggucgCGAGAUUGUGAUCuCCa -3' miRNA: 3'- cuaGGCUCGa-------GCUCUGACGCUGGuGG- -5' |
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32800 | 5' | -55.7 | NC_007346.1 | + | 266741 | 0.67 | 0.984633 |
Target: 5'- cGAUCuCGAGCgcauGACguaacGCGAUCGCCu -3' miRNA: 3'- -CUAG-GCUCGagcuCUGa----CGCUGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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