Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32801 | 3' | -52.8 | NC_007346.1 | + | 44141 | 0.66 | 0.998793 |
Target: 5'- cAGCGGCGCGcgcugcugCGAugcauGCGCGAGUc-- -3' miRNA: 3'- cUUGCCGCGUa-------GCUu----CGCGUUCGaac -5' |
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32801 | 3' | -52.8 | NC_007346.1 | + | 238243 | 0.66 | 0.998556 |
Target: 5'- aAGCGGCGUGUCGGugacuGGCGaCGgcGGCUc- -3' miRNA: 3'- cUUGCCGCGUAGCU-----UCGC-GU--UCGAac -5' |
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32801 | 3' | -52.8 | NC_007346.1 | + | 214875 | 0.68 | 0.99321 |
Target: 5'- --cCGGUGCuUCGAGGCGUuuGCa-- -3' miRNA: 3'- cuuGCCGCGuAGCUUCGCGuuCGaac -5' |
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32801 | 3' | -52.8 | NC_007346.1 | + | 215172 | 0.68 | 0.99321 |
Target: 5'- --cCGGUGCuUCGAGGCGUuuGCa-- -3' miRNA: 3'- cuuGCCGCGuAGCUUCGCGuuCGaac -5' |
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32801 | 3' | -52.8 | NC_007346.1 | + | 306049 | 0.68 | 0.99321 |
Target: 5'- gGAACGGCGUgcacGUCcgGGAGUGCAcGCUc- -3' miRNA: 3'- -CUUGCCGCG----UAG--CUUCGCGUuCGAac -5' |
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32801 | 3' | -52.8 | NC_007346.1 | + | 214381 | 0.68 | 0.99321 |
Target: 5'- --cCGGUGCuUCGAGGCGUuuGCa-- -3' miRNA: 3'- cuuGCCGCGuAGCUUCGCGuuCGaac -5' |
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32801 | 3' | -52.8 | NC_007346.1 | + | 274029 | 0.68 | 0.988677 |
Target: 5'- -cGCGGUGCucgCGAAGUGCA-GCa-- -3' miRNA: 3'- cuUGCCGCGua-GCUUCGCGUuCGaac -5' |
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32801 | 3' | -52.8 | NC_007346.1 | + | 311403 | 0.69 | 0.982083 |
Target: 5'- uGGCGGCGgAggCGAGG-GUGAGCUUGa -3' miRNA: 3'- cUUGCCGCgUa-GCUUCgCGUUCGAAC- -5' |
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32801 | 3' | -52.8 | NC_007346.1 | + | 246712 | 0.69 | 0.985668 |
Target: 5'- cAGCGGUGCGagCGAuuGUGCAAGCa-- -3' miRNA: 3'- cUUGCCGCGUa-GCUu-CGCGUUCGaac -5' |
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32801 | 3' | -52.8 | NC_007346.1 | + | 262411 | 0.7 | 0.974751 |
Target: 5'- -cACGGCGUAcuuuguggucaguuUCGucGCGCGAGCg-- -3' miRNA: 3'- cuUGCCGCGU--------------AGCuuCGCGUUCGaac -5' |
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32801 | 3' | -52.8 | NC_007346.1 | + | 310720 | 0.71 | 0.960848 |
Target: 5'- gGggUGGCGCAggCGGuguGgGUggGCUUGg -3' miRNA: 3'- -CuuGCCGCGUa-GCUu--CgCGuuCGAAC- -5' |
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32801 | 3' | -52.8 | NC_007346.1 | + | 274938 | 1.09 | 0.014106 |
Target: 5'- uGAACGGCGCAUCGAAGCGCAAGCUUGa -3' miRNA: 3'- -CUUGCCGCGUAGCUUCGCGUUCGAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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