Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32801 | 5' | -49.8 | NC_007346.1 | + | 56382 | 0.66 | 0.999979 |
Target: 5'- uUCAUGaauguugggaauGCCGCa--UG-GggUGCACCa -3' miRNA: 3'- cAGUAC------------UGGCGguaACuCuuACGUGG- -5' |
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32801 | 5' | -49.8 | NC_007346.1 | + | 249200 | 0.66 | 0.999972 |
Target: 5'- cUCAUGuCCGUCGUgaguugGAGGAUGuUACg -3' miRNA: 3'- cAGUACuGGCGGUAa-----CUCUUAC-GUGg -5' |
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32801 | 5' | -49.8 | NC_007346.1 | + | 159255 | 0.66 | 0.999962 |
Target: 5'- --aAUGACUGUCGUUG-GAAUuGCugCu -3' miRNA: 3'- cagUACUGGCGGUAACuCUUA-CGugG- -5' |
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32801 | 5' | -49.8 | NC_007346.1 | + | 98673 | 0.66 | 0.99995 |
Target: 5'- -aCGUGGCCcaccgcGUCGggauugGAGAAUGCACg -3' miRNA: 3'- caGUACUGG------CGGUaa----CUCUUACGUGg -5' |
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32801 | 5' | -49.8 | NC_007346.1 | + | 66439 | 0.67 | 0.999889 |
Target: 5'- uUCuuugGACCGCCAUguucaugGuGAAuaauguccgaaauUGCACCg -3' miRNA: 3'- cAGua--CUGGCGGUAa------CuCUU-------------ACGUGG- -5' |
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32801 | 5' | -49.8 | NC_007346.1 | + | 19500 | 0.67 | 0.999916 |
Target: 5'- -aCGUGAUUGCagcgcguuuuuUAUUGaAGAAUGCACUg -3' miRNA: 3'- caGUACUGGCG-----------GUAAC-UCUUACGUGG- -5' |
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32801 | 5' | -49.8 | NC_007346.1 | + | 365083 | 0.67 | 0.999777 |
Target: 5'- ----cGGCCGCCAUaucaaUGAGAGUucGCAUg -3' miRNA: 3'- caguaCUGGCGGUA-----ACUCUUA--CGUGg -5' |
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32801 | 5' | -49.8 | NC_007346.1 | + | 135137 | 0.68 | 0.999567 |
Target: 5'- gGUCuUGACCGCCggUGGcGGUGgAUCg -3' miRNA: 3'- -CAGuACUGGCGGuaACUcUUACgUGG- -5' |
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32801 | 5' | -49.8 | NC_007346.1 | + | 138951 | 0.68 | 0.999567 |
Target: 5'- -aUAUGAUaCGCCA---GGAAUGUACCg -3' miRNA: 3'- caGUACUG-GCGGUaacUCUUACGUGG- -5' |
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32801 | 5' | -49.8 | NC_007346.1 | + | 309626 | 0.68 | 0.999567 |
Target: 5'- -aCAUG-CCGUag--GAGAAUGCGCUu -3' miRNA: 3'- caGUACuGGCGguaaCUCUUACGUGG- -5' |
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32801 | 5' | -49.8 | NC_007346.1 | + | 50664 | 0.69 | 0.998441 |
Target: 5'- --aAUGAaugUCGCCAUcauaagcgcgguaauUGGGAAUGUACCa -3' miRNA: 3'- cagUACU---GGCGGUA---------------ACUCUUACGUGG- -5' |
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32801 | 5' | -49.8 | NC_007346.1 | + | 313538 | 0.71 | 0.992257 |
Target: 5'- aUUAUGACCGCauguaugGAGGcgGUACCc -3' miRNA: 3'- cAGUACUGGCGguaa---CUCUuaCGUGG- -5' |
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32801 | 5' | -49.8 | NC_007346.1 | + | 274904 | 1.14 | 0.014107 |
Target: 5'- cGUCAUGACCGCCAUUGAGAAUGCACCg -3' miRNA: 3'- -CAGUACUGGCGGUAACUCUUACGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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