Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32802 | 3' | -47.2 | NC_007346.1 | + | 254993 | 0.68 | 0.999976 |
Target: 5'- -uGGCGAGuUGUgGAGUUGgcuGAUGCg -3' miRNA: 3'- cuCCGCUUuACGgUUCAAUu--CUACGg -5' |
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32802 | 3' | -47.2 | NC_007346.1 | + | 250440 | 0.7 | 0.999799 |
Target: 5'- -uGGCGAGuUGUgGAGUUGAcuGAUGCg -3' miRNA: 3'- cuCCGCUUuACGgUUCAAUU--CUACGg -5' |
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32802 | 3' | -47.2 | NC_007346.1 | + | 86557 | 0.7 | 0.999843 |
Target: 5'- gGAGcGCGAcuugauAAUGCaCGAGUUGAGcUGCg -3' miRNA: 3'- -CUC-CGCU------UUACG-GUUCAAUUCuACGg -5' |
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32802 | 3' | -47.2 | NC_007346.1 | + | 258089 | 0.7 | 0.999868 |
Target: 5'- cGAGGCGGccauuuagggaacuGGUGgCGAGUUGuGGAguugGCCg -3' miRNA: 3'- -CUCCGCU--------------UUACgGUUCAAU-UCUa---CGG- -5' |
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32802 | 3' | -47.2 | NC_007346.1 | + | 264924 | 0.69 | 0.999927 |
Target: 5'- -cGGUGAGAUGUCGucg-AGGAUGCg -3' miRNA: 3'- cuCCGCUUUACGGUucaaUUCUACGg -5' |
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32802 | 3' | -47.2 | NC_007346.1 | + | 214210 | 0.68 | 0.999976 |
Target: 5'- cGGGUGGGAucguaUGCCAaccuuGGUagauGGAUGCCu -3' miRNA: 3'- cUCCGCUUU-----ACGGU-----UCAau--UCUACGG- -5' |
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32802 | 3' | -47.2 | NC_007346.1 | + | 251093 | 0.68 | 0.999976 |
Target: 5'- -uGGCGAGuUGUgGAGUUGgcuGAUGCg -3' miRNA: 3'- cuCCGCUUuACGgUUCAAUu--CUACGg -5' |
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32802 | 3' | -47.2 | NC_007346.1 | + | 252379 | 0.68 | 0.999976 |
Target: 5'- -uGGCGAGuUGUgGAGUUGgcuGAUGCg -3' miRNA: 3'- cuCCGCUUuACGgUUCAAUu--CUACGg -5' |
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32802 | 3' | -47.2 | NC_007346.1 | + | 253149 | 0.68 | 0.999976 |
Target: 5'- -uGGCGAGuUGUgGAGUUGgcuGAUGCg -3' miRNA: 3'- cuCCGCUUuACGgUUCAAUu--CUACGg -5' |
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32802 | 3' | -47.2 | NC_007346.1 | + | 32091 | 0.7 | 0.999681 |
Target: 5'- -uGGCGGA--GCCGucuuAGUgAGGGUGCCg -3' miRNA: 3'- cuCCGCUUuaCGGU----UCAaUUCUACGG- -5' |
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32802 | 3' | -47.2 | NC_007346.1 | + | 275319 | 0.7 | 0.999681 |
Target: 5'- uGGGUGAGAcgccGCCGGGUuugggUGAGAcGCCg -3' miRNA: 3'- cUCCGCUUUa---CGGUUCA-----AUUCUaCGG- -5' |
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32802 | 3' | -47.2 | NC_007346.1 | + | 275277 | 0.7 | 0.999681 |
Target: 5'- uGGGUGAGAcgccGCCGGGUuugggUGAGAcGCCg -3' miRNA: 3'- cUCCGCUUUa---CGGUUCA-----AUUCUaCGG- -5' |
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32802 | 3' | -47.2 | NC_007346.1 | + | 255914 | 0.68 | 0.999976 |
Target: 5'- -uGGCGAGuUGUgGAGUUGgcuGAUGCg -3' miRNA: 3'- cuCCGCUUuACGgUUCAAUu--CUACGg -5' |
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32802 | 3' | -47.2 | NC_007346.1 | + | 341161 | 0.68 | 0.999991 |
Target: 5'- cAGGUGAuAUGcCCGAG--AAGAUGaCCa -3' miRNA: 3'- cUCCGCUuUAC-GGUUCaaUUCUAC-GG- -5' |
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32802 | 3' | -47.2 | NC_007346.1 | + | 264593 | 0.68 | 0.999976 |
Target: 5'- -uGGCGAGuUGUgGAGUUGgcuGAUGCg -3' miRNA: 3'- cuCCGCUUuACGgUUCAAUu--CUACGg -5' |
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32802 | 3' | -47.2 | NC_007346.1 | + | 212112 | 0.68 | 0.999979 |
Target: 5'- aAGGCGAGagugcacgacgcuugGUGCCAGGaguacGUGCCu -3' miRNA: 3'- cUCCGCUU---------------UACGGUUCaauucUACGG- -5' |
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32802 | 3' | -47.2 | NC_007346.1 | + | 380760 | 0.66 | 1 |
Target: 5'- gGAGGUGAAG---CAAGUgAGGAUGCa -3' miRNA: 3'- -CUCCGCUUUacgGUUCAaUUCUACGg -5' |
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32802 | 3' | -47.2 | NC_007346.1 | + | 255455 | 0.73 | 0.99681 |
Target: 5'- -uGGCGAAAagcugGCCGgcAGUUGGGAuacccUGCCg -3' miRNA: 3'- cuCCGCUUUa----CGGU--UCAAUUCU-----ACGG- -5' |
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32802 | 3' | -47.2 | NC_007346.1 | + | 256768 | 0.72 | 0.999084 |
Target: 5'- -uGGCGAGuUGCgGAGUUGgcuGAUGCg -3' miRNA: 3'- cuCCGCUUuACGgUUCAAUu--CUACGg -5' |
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32802 | 3' | -47.2 | NC_007346.1 | + | 262626 | 0.72 | 0.999084 |
Target: 5'- -uGGCGAGuUGCgGAGUUGgcuGAUGCg -3' miRNA: 3'- cuCCGCUUuACGgUUCAAUu--CUACGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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