Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32802 | 5' | -56.1 | NC_007346.1 | + | 275085 | 1.09 | 0.007144 |
Target: 5'- aUGAGCAUCUCACUCGCGCACAGCGCAu -3' miRNA: 3'- -ACUCGUAGAGUGAGCGCGUGUCGCGU- -5' |
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32802 | 5' | -56.1 | NC_007346.1 | + | 233263 | 0.73 | 0.740555 |
Target: 5'- --cGCGUaccCUCACUCGCGC-CAGCuGCAa -3' miRNA: 3'- acuCGUA---GAGUGAGCGCGuGUCG-CGU- -5' |
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32802 | 5' | -56.1 | NC_007346.1 | + | 86909 | 0.73 | 0.776823 |
Target: 5'- cGGGCAUCUCGgUCGacuGCAUcuGCGCAg -3' miRNA: 3'- aCUCGUAGAGUgAGCg--CGUGu-CGCGU- -5' |
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32802 | 5' | -56.1 | NC_007346.1 | + | 274044 | 0.72 | 0.794286 |
Target: 5'- gUGcAGCAUCggcgUugUCGCGCGCAGUaauuGCAu -3' miRNA: 3'- -AC-UCGUAGa---GugAGCGCGUGUCG----CGU- -5' |
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32802 | 5' | -56.1 | NC_007346.1 | + | 238123 | 0.72 | 0.819471 |
Target: 5'- -cAGCGUCUUACUgUGCGCGC-GCGUAg -3' miRNA: 3'- acUCGUAGAGUGA-GCGCGUGuCGCGU- -5' |
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32802 | 5' | -56.1 | NC_007346.1 | + | 138089 | 0.7 | 0.898732 |
Target: 5'- cUGGGCGU-UCACUCGgGCGgCGGCgGCGg -3' miRNA: 3'- -ACUCGUAgAGUGAGCgCGU-GUCG-CGU- -5' |
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32802 | 5' | -56.1 | NC_007346.1 | + | 230410 | 0.67 | 0.966801 |
Target: 5'- gUGGGUAUCggAUUUGCGCACAuacGgGCAg -3' miRNA: 3'- -ACUCGUAGagUGAGCGCGUGU---CgCGU- -5' |
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32802 | 5' | -56.1 | NC_007346.1 | + | 252708 | 0.67 | 0.972408 |
Target: 5'- cGcGCgGUCUC-CUCGCGauuuauCAGCGCAa -3' miRNA: 3'- aCuCG-UAGAGuGAGCGCgu----GUCGCGU- -5' |
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32802 | 5' | -56.1 | NC_007346.1 | + | 85998 | 0.66 | 0.977298 |
Target: 5'- aGAGCucggagUUCGCgUCGUGCGCGGCa-- -3' miRNA: 3'- aCUCGua----GAGUG-AGCGCGUGUCGcgu -5' |
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32802 | 5' | -56.1 | NC_007346.1 | + | 239846 | 0.66 | 0.982286 |
Target: 5'- --uGCAUCUCGCuuggucuuguacaugUCGCGgACGGUGUc -3' miRNA: 3'- acuCGUAGAGUG---------------AGCGCgUGUCGCGu -5' |
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32802 | 5' | -56.1 | NC_007346.1 | + | 275675 | 0.66 | 0.982846 |
Target: 5'- -cGGCGUCUCAC-CGUGUuucaccaaauccagACGGCGUc -3' miRNA: 3'- acUCGUAGAGUGaGCGCG--------------UGUCGCGu -5' |
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32802 | 5' | -56.1 | NC_007346.1 | + | 137417 | 0.66 | 0.983392 |
Target: 5'- aUGGGCcgC-CACUCGCGgCAUGGCu-- -3' miRNA: 3'- -ACUCGuaGaGUGAGCGC-GUGUCGcgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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