Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32803 | 3' | -59.4 | NC_007346.1 | + | 275762 | 1.11 | 0.003607 |
Target: 5'- cGGCGGCGUCUCACCCAAACCCGGCGGc -3' miRNA: 3'- -CCGCCGCAGAGUGGGUUUGGGCCGCC- -5' |
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32803 | 3' | -59.4 | NC_007346.1 | + | 275720 | 1.11 | 0.003607 |
Target: 5'- cGGCGGCGUCUCACCCAAACCCGGCGGc -3' miRNA: 3'- -CCGCCGCAGAGUGGGUUUGGGCCGCC- -5' |
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32803 | 3' | -59.4 | NC_007346.1 | + | 227890 | 0.93 | 0.05703 |
Target: 5'- cGGCGGCGUCUCAgUCAAuCCCGGCGGc -3' miRNA: 3'- -CCGCCGCAGAGUgGGUUuGGGCCGCC- -5' |
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32803 | 3' | -59.4 | NC_007346.1 | + | 227848 | 0.93 | 0.05703 |
Target: 5'- cGGCGGCGUCUCAgUCAAuCCCGGCGGc -3' miRNA: 3'- -CCGCCGCAGAGUgGGUUuGGGCCGCC- -5' |
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32803 | 3' | -59.4 | NC_007346.1 | + | 275802 | 0.92 | 0.062864 |
Target: 5'- -aCGGCGUCUCAUUCAAACCCGGCGGc -3' miRNA: 3'- ccGCCGCAGAGUGGGUUUGGGCCGCC- -5' |
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32803 | 3' | -59.4 | NC_007346.1 | + | 275695 | 0.91 | 0.069272 |
Target: 5'- ---nGCGUCUCACCCAAACCCGGCGGc -3' miRNA: 3'- ccgcCGCAGAGUGGGUUUGGGCCGCC- -5' |
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32803 | 3' | -59.4 | NC_007346.1 | + | 227955 | 0.81 | 0.276749 |
Target: 5'- -aCGGCGUCUCAgUCAAACUCGGUGGc -3' miRNA: 3'- ccGCCGCAGAGUgGGUUUGGGCCGCC- -5' |
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32803 | 3' | -59.4 | NC_007346.1 | + | 239548 | 0.75 | 0.568936 |
Target: 5'- cGGCGGCGgugaugguggUCUCA-UCAAACUCGGUGGc -3' miRNA: 3'- -CCGCCGC----------AGAGUgGGUUUGGGCCGCC- -5' |
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32803 | 3' | -59.4 | NC_007346.1 | + | 280443 | 0.73 | 0.642554 |
Target: 5'- cGCGGCaggGUCgCAUCCAccaauCCCGGCGGu -3' miRNA: 3'- cCGCCG---CAGaGUGGGUuu---GGGCCGCC- -5' |
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32803 | 3' | -59.4 | NC_007346.1 | + | 227915 | 0.73 | 0.688523 |
Target: 5'- ---nGCGUCUCAgUCAAuCCCGGCGGc -3' miRNA: 3'- ccgcCGCAGAGUgGGUUuGGGCCGCC- -5' |
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32803 | 3' | -59.4 | NC_007346.1 | + | 86632 | 0.7 | 0.809472 |
Target: 5'- cGGC-GCGUgUCACacaGAAgCCGGCGGu -3' miRNA: 3'- -CCGcCGCAgAGUGgg-UUUgGGCCGCC- -5' |
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32803 | 3' | -59.4 | NC_007346.1 | + | 208434 | 0.7 | 0.81734 |
Target: 5'- gGGCGGUGUUUCGUCaCGAAaggCGGCGGg -3' miRNA: 3'- -CCGCCGCAGAGUGG-GUUUgg-GCCGCC- -5' |
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32803 | 3' | -59.4 | NC_007346.1 | + | 307165 | 0.69 | 0.87488 |
Target: 5'- cGGCGGCGaCggGCUggggggcggCGGGCUCGGCGGc -3' miRNA: 3'- -CCGCCGCaGagUGG---------GUUUGGGCCGCC- -5' |
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32803 | 3' | -59.4 | NC_007346.1 | + | 53881 | 0.69 | 0.881323 |
Target: 5'- cGGC-GCGUCaUCugCCGAAaauaaCCGcGCGGu -3' miRNA: 3'- -CCGcCGCAG-AGugGGUUUg----GGC-CGCC- -5' |
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32803 | 3' | -59.4 | NC_007346.1 | + | 309730 | 0.68 | 0.893664 |
Target: 5'- uGGCGGCGaCggGCUgggaggcggCGGGCUCGGCGGc -3' miRNA: 3'- -CCGCCGCaGagUGG---------GUUUGGGCCGCC- -5' |
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32803 | 3' | -59.4 | NC_007346.1 | + | 225998 | 0.68 | 0.910771 |
Target: 5'- cGUGGCGUC-CugaCGAACCagaGGCGGa -3' miRNA: 3'- cCGCCGCAGaGuggGUUUGGg--CCGCC- -5' |
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32803 | 3' | -59.4 | NC_007346.1 | + | 128023 | 0.68 | 0.91609 |
Target: 5'- uGGCGGUGguggaCUCGgCgGuggugGACUCGGCGGc -3' miRNA: 3'- -CCGCCGCa----GAGUgGgU-----UUGGGCCGCC- -5' |
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32803 | 3' | -59.4 | NC_007346.1 | + | 86875 | 0.67 | 0.923212 |
Target: 5'- aGGCGGCcgagcgugaugcgCUCACCgCGAACgCUGGCa- -3' miRNA: 3'- -CCGCCGca-----------GAGUGG-GUUUG-GGCCGcc -5' |
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32803 | 3' | -59.4 | NC_007346.1 | + | 221557 | 0.67 | 0.926147 |
Target: 5'- cGGCGGCac--CGCCCAuACCa-GCGGg -3' miRNA: 3'- -CCGCCGcagaGUGGGUuUGGgcCGCC- -5' |
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32803 | 3' | -59.4 | NC_007346.1 | + | 238285 | 0.67 | 0.930883 |
Target: 5'- uGGCGaCGguggCUCACCUucGACCggcgaCGGCGGc -3' miRNA: 3'- -CCGCcGCa---GAGUGGGu-UUGG-----GCCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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