miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32803 5' -57.5 NC_007346.1 + 137623 0.66 0.976856
Target:  5'- -aCCGGCGGCGUuuaauacgguacaCUCACCGc------ -3'
miRNA:   3'- ugGGCCGCCGCA-------------GAGUGGCacaaagu -5'
32803 5' -57.5 NC_007346.1 + 42384 0.66 0.974768
Target:  5'- aGCCUGGCGGUc-CUCAUCuUGUUUUg -3'
miRNA:   3'- -UGGGCCGCCGcaGAGUGGcACAAAGu -5'
32803 5' -57.5 NC_007346.1 + 128723 0.66 0.974768
Target:  5'- aACCCGGCGGCGguggCg-GCgGUGg--CGg -3'
miRNA:   3'- -UGGGCCGCCGCa---GagUGgCACaaaGU- -5'
32803 5' -57.5 NC_007346.1 + 252200 0.67 0.963812
Target:  5'- aAUUCGGCGGCGUUguagAgUGUGUUUCu -3'
miRNA:   3'- -UGGGCCGCCGCAGag--UgGCACAAAGu -5'
32803 5' -57.5 NC_007346.1 + 227929 0.71 0.808808
Target:  5'- uCCCGGCGGCGUCUCagucaaucucgACgGcGUcUCAg -3'
miRNA:   3'- uGGGCCGCCGCAGAG-----------UGgCaCAaAGU- -5'
32803 5' -57.5 NC_007346.1 + 275787 0.75 0.637113
Target:  5'- aACCCGGCGGCGUCUCAUUc------- -3'
miRNA:   3'- -UGGGCCGCCGCAGAGUGGcacaaagu -5'
32803 5' -57.5 NC_007346.1 + 227887 0.76 0.57005
Target:  5'- uCCCGGCGGCGUCUCAgucaaucCCGgcggcGUcUCAg -3'
miRNA:   3'- uGGGCCGCCGCAGAGU-------GGCa----CAaAGU- -5'
32803 5' -57.5 NC_007346.1 + 227845 0.76 0.57005
Target:  5'- uCCCGGCGGCGUCUCAgucaaucCCGgcggcGUcUCAg -3'
miRNA:   3'- uGGGCCGCCGCAGAGU-------GGCa----CAaAGU- -5'
32803 5' -57.5 NC_007346.1 + 275652 0.8 0.351352
Target:  5'- aAUCCaGaCGGCGUCUCACCGUGUUUa- -3'
miRNA:   3'- -UGGGcC-GCCGCAGAGUGGCACAAAgu -5'
32803 5' -57.5 NC_007346.1 + 275766 0.82 0.28429
Target:  5'- aACCCGGCGGCGUCUCACCc------- -3'
miRNA:   3'- -UGGGCCGCCGCAGAGUGGcacaaagu -5'
32803 5' -57.5 NC_007346.1 + 275724 0.82 0.28429
Target:  5'- aACCCGGCGGCGUCUCACCc------- -3'
miRNA:   3'- -UGGGCCGCCGCAGAGUGGcacaaagu -5'
32803 5' -57.5 NC_007346.1 + 275703 0.82 0.28429
Target:  5'- aACCCGGCGGCGUCUCACCc------- -3'
miRNA:   3'- -UGGGCCGCCGCAGAGUGGcacaaagu -5'
32803 5' -57.5 NC_007346.1 + 275745 0.82 0.28429
Target:  5'- aACCCGGCGGCGUCUCACCc------- -3'
miRNA:   3'- -UGGGCCGCCGCAGAGUGGcacaaagu -5'
32803 5' -57.5 NC_007346.1 + 275682 1.08 0.007722
Target:  5'- aACCCGGCGGCGUCUCACCGUGUUUCAc -3'
miRNA:   3'- -UGGGCCGCCGCAGAGUGGCACAAAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.