miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32806 3' -49.7 NC_007346.1 + 238084 0.66 0.999929
Target:  5'- cGUCGUGGACGC---GGuCGCUUGUUu -3'
miRNA:   3'- uUAGUAUCUGCGuagCCuGUGAACGA- -5'
32806 3' -49.7 NC_007346.1 + 10510 0.67 0.99988
Target:  5'- uGUCGUGcGACGaacacgacaCAUCGGACACgaugUUGCa -3'
miRNA:   3'- uUAGUAU-CUGC---------GUAGCCUGUG----AACGa -5'
32806 3' -49.7 NC_007346.1 + 231220 0.67 0.999847
Target:  5'- cAUCAUGGAC-CucUUGGACACgUGCg -3'
miRNA:   3'- uUAGUAUCUGcGu-AGCCUGUGaACGa -5'
32806 3' -49.7 NC_007346.1 + 260174 0.67 0.999847
Target:  5'- aGGUCGgAGACGCGUauGAUACgcugUGCg -3'
miRNA:   3'- -UUAGUaUCUGCGUAgcCUGUGa---ACGa -5'
32806 3' -49.7 NC_007346.1 + 214966 0.69 0.998457
Target:  5'- -uUUGUGGAUGCAUUGGACAa--GCUu -3'
miRNA:   3'- uuAGUAUCUGCGUAGCCUGUgaaCGA- -5'
32806 3' -49.7 NC_007346.1 + 390918 0.7 0.996954
Target:  5'- gAGUCAUGGuuGCcccgCGGACACgaaUGCUg -3'
miRNA:   3'- -UUAGUAUCugCGua--GCCUGUGa--ACGA- -5'
32806 3' -49.7 NC_007346.1 + 269540 0.72 0.989042
Target:  5'- uGUCAUGGACaguGCAgCGGAUguGCUUGCa -3'
miRNA:   3'- uUAGUAUCUG---CGUaGCCUG--UGAACGa -5'
32806 3' -49.7 NC_007346.1 + 384607 0.72 0.982395
Target:  5'- gGGUUAUucugGGAUGCAUCGGauGCAUUUGCa -3'
miRNA:   3'- -UUAGUA----UCUGCGUAGCC--UGUGAACGa -5'
32806 3' -49.7 NC_007346.1 + 18309 0.76 0.91958
Target:  5'- aAAUCAUAGAUGCAUUuaGGuCAUUUGCUu -3'
miRNA:   3'- -UUAGUAUCUGCGUAG--CCuGUGAACGA- -5'
32806 3' -49.7 NC_007346.1 + 290634 0.76 0.91958
Target:  5'- uAUCAUGGuCGCAUCGGAgaacacCAUUUGCa -3'
miRNA:   3'- uUAGUAUCuGCGUAGCCU------GUGAACGa -5'
32806 3' -49.7 NC_007346.1 + 323535 1.07 0.035483
Target:  5'- cAAUCAUAGACGCAUCGGACACUUGCUg -3'
miRNA:   3'- -UUAGUAUCUGCGUAGCCUGUGAACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.