Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 32808 | 5' | -46.6 | NC_007346.1 | + | 256974 | 0.66 | 1 |
|
Target: 5'- --aGUCGCAUccGGGUcgggUCUuaAGUACgUCCa -3' miRNA: 3'- auaCAGUGUA--CUCA----AGA--UCAUGgAGG- -5' |
|||||||
| 32808 | 5' | -46.6 | NC_007346.1 | + | 65956 | 0.66 | 1 |
|
Target: 5'- aUGUGcCACAUGAGUUUgaugaagAGU-CCUUg -3' miRNA: 3'- -AUACaGUGUACUCAAGa------UCAuGGAGg -5' |
|||||||
| 32808 | 5' | -46.6 | NC_007346.1 | + | 82801 | 0.69 | 0.999986 |
|
Target: 5'- cUAUGUCACGUGGaagcGUUgUGGcacaUACCUCg -3' miRNA: 3'- -AUACAGUGUACU----CAAgAUC----AUGGAGg -5' |
|||||||
| 32808 | 5' | -46.6 | NC_007346.1 | + | 325659 | 0.69 | 0.999966 |
|
Target: 5'- cAUGUCugcuuGCaAUGAGUggUCgucGUACCUCCg -3' miRNA: 3'- aUACAG-----UG-UACUCA--AGau-CAUGGAGG- -5' |
|||||||
| 32808 | 5' | -46.6 | NC_007346.1 | + | 153695 | 0.75 | 0.993859 |
|
Target: 5'- --aGUCGCAgGGGUugaUUUAGUACUUCCa -3' miRNA: 3'- auaCAGUGUaCUCA---AGAUCAUGGAGG- -5' |
|||||||
| 32808 | 5' | -46.6 | NC_007346.1 | + | 336781 | 1.11 | 0.041939 |
|
Target: 5'- aUAUGUCACAUGAGUUCUAGUACCUCCc -3' miRNA: 3'- -AUACAGUGUACUCAAGAUCAUGGAGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home