miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32809 3' -55.2 NC_007346.1 + 73945 0.66 0.996273
Target:  5'- -cAUCGCCuGCGacaUUCUCUGCAaUACCc -3'
miRNA:   3'- ccUGGCGG-CGCc--AAGAGGCGUaAUGG- -5'
32809 3' -55.2 NC_007346.1 + 309635 0.66 0.995701
Target:  5'- --uCCGCCGCca-UCUCCGCc--GCCa -3'
miRNA:   3'- ccuGGCGGCGccaAGAGGCGuaaUGG- -5'
32809 3' -55.2 NC_007346.1 + 185722 0.66 0.993542
Target:  5'- -aAUCGCCGUuuGGUUCUUgGUAUggaACCg -3'
miRNA:   3'- ccUGGCGGCG--CCAAGAGgCGUAa--UGG- -5'
32809 3' -55.2 NC_007346.1 + 101191 0.66 0.993542
Target:  5'- --uCgGCgGCGGUg--CCGCAUUACUu -3'
miRNA:   3'- ccuGgCGgCGCCAagaGGCGUAAUGG- -5'
32809 3' -55.2 NC_007346.1 + 187983 0.67 0.992654
Target:  5'- -cAUCGCCGC----CUCCGCcAUUACCa -3'
miRNA:   3'- ccUGGCGGCGccaaGAGGCG-UAAUGG- -5'
32809 3' -55.2 NC_007346.1 + 264992 0.67 0.992654
Target:  5'- uGAUUGCgGCGGgugUCgUCCGUGUUAUg -3'
miRNA:   3'- cCUGGCGgCGCCa--AG-AGGCGUAAUGg -5'
32809 3' -55.2 NC_007346.1 + 75532 0.67 0.990588
Target:  5'- -uACCGaCCGUGGUUUuuUCCGU---GCCa -3'
miRNA:   3'- ccUGGC-GGCGCCAAG--AGGCGuaaUGG- -5'
32809 3' -55.2 NC_007346.1 + 98282 0.67 0.990588
Target:  5'- aGGcGCCGCCgGCGGUUCaaaaaaCGCGgcauCCu -3'
miRNA:   3'- -CC-UGGCGG-CGCCAAGag----GCGUaau-GG- -5'
32809 3' -55.2 NC_007346.1 + 157708 0.67 0.989397
Target:  5'- aGGAgCuCCGCGaGgcaUCCGCAcUUGCCa -3'
miRNA:   3'- -CCUgGcGGCGC-CaagAGGCGU-AAUGG- -5'
32809 3' -55.2 NC_007346.1 + 311202 0.67 0.986664
Target:  5'- -uACCGCCGCca-UCUCCaucgcCAUUACCg -3'
miRNA:   3'- ccUGGCGGCGccaAGAGGc----GUAAUGG- -5'
32809 3' -55.2 NC_007346.1 + 201571 0.68 0.985109
Target:  5'- --uCUGCUGgGGgugUUUCCGCAUaucUACCa -3'
miRNA:   3'- ccuGGCGGCgCCa--AGAGGCGUA---AUGG- -5'
32809 3' -55.2 NC_007346.1 + 239334 0.68 0.985109
Target:  5'- cGGAuuucaaucCCGCgCGCGGUgCUcaaaCCGCAaagUACCu -3'
miRNA:   3'- -CCU--------GGCG-GCGCCAaGA----GGCGUa--AUGG- -5'
32809 3' -55.2 NC_007346.1 + 87189 0.68 0.98342
Target:  5'- uGGGCCG-CGCGGgccgCCGUcUUACUg -3'
miRNA:   3'- -CCUGGCgGCGCCaagaGGCGuAAUGG- -5'
32809 3' -55.2 NC_007346.1 + 305885 0.68 0.97748
Target:  5'- -cACCGCCGCca-UCUCCGCcuccACCg -3'
miRNA:   3'- ccUGGCGGCGccaAGAGGCGuaa-UGG- -5'
32809 3' -55.2 NC_007346.1 + 174093 0.69 0.975189
Target:  5'- gGGGCCGuuGUG----UCCGaCAUUGCCa -3'
miRNA:   3'- -CCUGGCggCGCcaagAGGC-GUAAUGG- -5'
32809 3' -55.2 NC_007346.1 + 257884 0.69 0.9673
Target:  5'- cGGACaCGCCGCGuagaUUC-CCGCGcaucUGCCc -3'
miRNA:   3'- -CCUG-GCGGCGCc---AAGaGGCGUa---AUGG- -5'
32809 3' -55.2 NC_007346.1 + 153449 0.7 0.957782
Target:  5'- gGGACCGUguCGGcUUUCCcauGCGUUACCg -3'
miRNA:   3'- -CCUGGCGgcGCCaAGAGG---CGUAAUGG- -5'
32809 3' -55.2 NC_007346.1 + 313974 0.7 0.957782
Target:  5'- gGGuACCGCCuccauacauGCGGUcauaaUUUCUGCAUcuuUACCg -3'
miRNA:   3'- -CC-UGGCGG---------CGCCA-----AGAGGCGUA---AUGG- -5'
32809 3' -55.2 NC_007346.1 + 137418 0.71 0.938013
Target:  5'- uGGGCCGCCacucgcggcaugGCuGGUUCUgCgGCGggUGCCa -3'
miRNA:   3'- -CCUGGCGG------------CG-CCAAGA-GgCGUa-AUGG- -5'
32809 3' -55.2 NC_007346.1 + 309688 0.71 0.938013
Target:  5'- -cACCGCCGCca-UCUCCGCcacUGCCu -3'
miRNA:   3'- ccUGGCGGCGccaAGAGGCGua-AUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.