Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32809 | 3' | -55.2 | NC_007346.1 | + | 73945 | 0.66 | 0.996273 |
Target: 5'- -cAUCGCCuGCGacaUUCUCUGCAaUACCc -3' miRNA: 3'- ccUGGCGG-CGCc--AAGAGGCGUaAUGG- -5' |
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32809 | 3' | -55.2 | NC_007346.1 | + | 75532 | 0.67 | 0.990588 |
Target: 5'- -uACCGaCCGUGGUUUuuUCCGU---GCCa -3' miRNA: 3'- ccUGGC-GGCGCCAAG--AGGCGuaaUGG- -5' |
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32809 | 3' | -55.2 | NC_007346.1 | + | 87189 | 0.68 | 0.98342 |
Target: 5'- uGGGCCG-CGCGGgccgCCGUcUUACUg -3' miRNA: 3'- -CCUGGCgGCGCCaagaGGCGuAAUGG- -5' |
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32809 | 3' | -55.2 | NC_007346.1 | + | 98282 | 0.67 | 0.990588 |
Target: 5'- aGGcGCCGCCgGCGGUUCaaaaaaCGCGgcauCCu -3' miRNA: 3'- -CC-UGGCGG-CGCCAAGag----GCGUaau-GG- -5' |
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32809 | 3' | -55.2 | NC_007346.1 | + | 101191 | 0.66 | 0.993542 |
Target: 5'- --uCgGCgGCGGUg--CCGCAUUACUu -3' miRNA: 3'- ccuGgCGgCGCCAagaGGCGUAAUGG- -5' |
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32809 | 3' | -55.2 | NC_007346.1 | + | 137418 | 0.71 | 0.938013 |
Target: 5'- uGGGCCGCCacucgcggcaugGCuGGUUCUgCgGCGggUGCCa -3' miRNA: 3'- -CCUGGCGG------------CG-CCAAGA-GgCGUa-AUGG- -5' |
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32809 | 3' | -55.2 | NC_007346.1 | + | 153449 | 0.7 | 0.957782 |
Target: 5'- gGGACCGUguCGGcUUUCCcauGCGUUACCg -3' miRNA: 3'- -CCUGGCGgcGCCaAGAGG---CGUAAUGG- -5' |
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32809 | 3' | -55.2 | NC_007346.1 | + | 157708 | 0.67 | 0.989397 |
Target: 5'- aGGAgCuCCGCGaGgcaUCCGCAcUUGCCa -3' miRNA: 3'- -CCUgGcGGCGC-CaagAGGCGU-AAUGG- -5' |
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32809 | 3' | -55.2 | NC_007346.1 | + | 174093 | 0.69 | 0.975189 |
Target: 5'- gGGGCCGuuGUG----UCCGaCAUUGCCa -3' miRNA: 3'- -CCUGGCggCGCcaagAGGC-GUAAUGG- -5' |
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32809 | 3' | -55.2 | NC_007346.1 | + | 185722 | 0.66 | 0.993542 |
Target: 5'- -aAUCGCCGUuuGGUUCUUgGUAUggaACCg -3' miRNA: 3'- ccUGGCGGCG--CCAAGAGgCGUAa--UGG- -5' |
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32809 | 3' | -55.2 | NC_007346.1 | + | 187983 | 0.67 | 0.992654 |
Target: 5'- -cAUCGCCGC----CUCCGCcAUUACCa -3' miRNA: 3'- ccUGGCGGCGccaaGAGGCG-UAAUGG- -5' |
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32809 | 3' | -55.2 | NC_007346.1 | + | 201571 | 0.68 | 0.985109 |
Target: 5'- --uCUGCUGgGGgugUUUCCGCAUaucUACCa -3' miRNA: 3'- ccuGGCGGCgCCa--AGAGGCGUA---AUGG- -5' |
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32809 | 3' | -55.2 | NC_007346.1 | + | 239137 | 0.72 | 0.883147 |
Target: 5'- -cGCCGCCGCGGUUgcaUCCaaGUUGCUc -3' miRNA: 3'- ccUGGCGGCGCCAAg--AGGcgUAAUGG- -5' |
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32809 | 3' | -55.2 | NC_007346.1 | + | 239334 | 0.68 | 0.985109 |
Target: 5'- cGGAuuucaaucCCGCgCGCGGUgCUcaaaCCGCAaagUACCu -3' miRNA: 3'- -CCU--------GGCG-GCGCCAaGA----GGCGUa--AUGG- -5' |
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32809 | 3' | -55.2 | NC_007346.1 | + | 257884 | 0.69 | 0.9673 |
Target: 5'- cGGACaCGCCGCGuagaUUC-CCGCGcaucUGCCc -3' miRNA: 3'- -CCUG-GCGGCGCc---AAGaGGCGUa---AUGG- -5' |
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32809 | 3' | -55.2 | NC_007346.1 | + | 264992 | 0.67 | 0.992654 |
Target: 5'- uGAUUGCgGCGGgugUCgUCCGUGUUAUg -3' miRNA: 3'- cCUGGCGgCGCCa--AG-AGGCGUAAUGg -5' |
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32809 | 3' | -55.2 | NC_007346.1 | + | 305885 | 0.68 | 0.97748 |
Target: 5'- -cACCGCCGCca-UCUCCGCcuccACCg -3' miRNA: 3'- ccUGGCGGCGccaAGAGGCGuaa-UGG- -5' |
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32809 | 3' | -55.2 | NC_007346.1 | + | 309635 | 0.66 | 0.995701 |
Target: 5'- --uCCGCCGCca-UCUCCGCc--GCCa -3' miRNA: 3'- ccuGGCGGCGccaAGAGGCGuaaUGG- -5' |
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32809 | 3' | -55.2 | NC_007346.1 | + | 309688 | 0.71 | 0.938013 |
Target: 5'- -cACCGCCGCca-UCUCCGCcacUGCCu -3' miRNA: 3'- ccUGGCGGCGccaAGAGGCGua-AUGG- -5' |
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32809 | 3' | -55.2 | NC_007346.1 | + | 311202 | 0.67 | 0.986664 |
Target: 5'- -uACCGCCGCca-UCUCCaucgcCAUUACCg -3' miRNA: 3'- ccUGGCGGCGccaAGAGGc----GUAAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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