miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32809 5' -51.7 NC_007346.1 + 67956 0.65 0.999761
Target:  5'- gGGGGCcGCguacauaacucggaCGGAUGCCcuUGCAGUgCGGg -3'
miRNA:   3'- -UUCUGuUG--------------GCCUAUGGu-ACGUCA-GCC- -5'
32809 5' -51.7 NC_007346.1 + 326898 0.66 0.99972
Target:  5'- -uGAUcGCUGuGGUGCgCAUGCAG-CGGg -3'
miRNA:   3'- uuCUGuUGGC-CUAUG-GUACGUCaGCC- -5'
32809 5' -51.7 NC_007346.1 + 134547 0.66 0.99957
Target:  5'- gGAGcGCGuCCGGugcGCCGUGCGGUUGc -3'
miRNA:   3'- -UUC-UGUuGGCCua-UGGUACGUCAGCc -5'
32809 5' -51.7 NC_007346.1 + 274116 0.66 0.999354
Target:  5'- gGGGACGuGCuCGGAUuucgucaagacGCCGUGCGGaugCGGu -3'
miRNA:   3'- -UUCUGU-UG-GCCUA-----------UGGUACGUCa--GCC- -5'
32809 5' -51.7 NC_007346.1 + 275365 0.67 0.999214
Target:  5'- uGAGACGccGCCGGGUuugaaugagacGCCGUGUuguGGUggCGGg -3'
miRNA:   3'- -UUCUGU--UGGCCUA-----------UGGUACG---UCA--GCC- -5'
32809 5' -51.7 NC_007346.1 + 169463 0.67 0.99905
Target:  5'- ---uCAACCGG-UGCCAUuaucgguaucGCAGUUGGu -3'
miRNA:   3'- uucuGUUGGCCuAUGGUA----------CGUCAGCC- -5'
32809 5' -51.7 NC_007346.1 + 7083 0.68 0.997714
Target:  5'- uAAGACGACCauaacagcaguGGuaAUACCG-GCAGUUGGc -3'
miRNA:   3'- -UUCUGUUGG-----------CC--UAUGGUaCGUCAGCC- -5'
32809 5' -51.7 NC_007346.1 + 67435 0.68 0.996332
Target:  5'- uGGAC-GCCGGcAUACCAccucgaauUGCGG-CGGg -3'
miRNA:   3'- uUCUGuUGGCC-UAUGGU--------ACGUCaGCC- -5'
32809 5' -51.7 NC_007346.1 + 5588 0.69 0.994328
Target:  5'- uGGGGgGACCGGcAUACCcUGaaUAGUCGGu -3'
miRNA:   3'- -UUCUgUUGGCC-UAUGGuAC--GUCAGCC- -5'
32809 5' -51.7 NC_007346.1 + 14202 0.69 0.994328
Target:  5'- -uGACAACCGGAUgaucaaacacgACCA---AGUCGGu -3'
miRNA:   3'- uuCUGUUGGCCUA-----------UGGUacgUCAGCC- -5'
32809 5' -51.7 NC_007346.1 + 362042 1.1 0.01777
Target:  5'- cAAGACAACCGGAUACCAUGCAGUCGGg -3'
miRNA:   3'- -UUCUGUUGGCCUAUGGUACGUCAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.