miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32810 3' -54.7 NC_007346.1 + 281032 0.66 0.994413
Target:  5'- --aUGACCgcaaAGgGGUACGACgUCGCuGCAg -3'
miRNA:   3'- uacACUGG----UCgCUAUGCUG-AGCG-CGU- -5'
32810 3' -54.7 NC_007346.1 + 45241 0.66 0.991685
Target:  5'- uAUGUGAUa--CGAUGCGACaUGUGCAa -3'
miRNA:   3'- -UACACUGgucGCUAUGCUGaGCGCGU- -5'
32810 3' -54.7 NC_007346.1 + 66495 0.67 0.989344
Target:  5'- --uUGGCCAGCaGAUuguUGGCggugCGCGCAu -3'
miRNA:   3'- uacACUGGUCG-CUAu--GCUGa---GCGCGU- -5'
32810 3' -54.7 NC_007346.1 + 239517 0.67 0.989084
Target:  5'- -gGUGGCCAggugcucggaaagcuGCGAgaucagcucagaugGCGugUCGUGCAu -3'
miRNA:   3'- uaCACUGGU---------------CGCUa-------------UGCugAGCGCGU- -5'
32810 3' -54.7 NC_007346.1 + 263073 0.67 0.987996
Target:  5'- -gGUGAUCGGCauuuCGauGCUCGCGCGu -3'
miRNA:   3'- uaCACUGGUCGcuauGC--UGAGCGCGU- -5'
32810 3' -54.7 NC_007346.1 + 87049 0.67 0.987996
Target:  5'- uAUGgaagGACguGCGAUACGucaGCcUGCGCAg -3'
miRNA:   3'- -UACa---CUGguCGCUAUGC---UGaGCGCGU- -5'
32810 3' -54.7 NC_007346.1 + 224940 0.7 0.948601
Target:  5'- cGUGUcugGAUUAuCGAUAUGACUUGCGCAu -3'
miRNA:   3'- -UACA---CUGGUcGCUAUGCUGAGCGCGU- -5'
32810 3' -54.7 NC_007346.1 + 246699 0.7 0.948601
Target:  5'- cUGUGGCUAGCGAcagcggUGCGAgcgaUUGUGCAa -3'
miRNA:   3'- uACACUGGUCGCU------AUGCUg---AGCGCGU- -5'
32810 3' -54.7 NC_007346.1 + 275560 0.7 0.935468
Target:  5'- -cGUGugCGGCGuguUAUGACUUGUGUu -3'
miRNA:   3'- uaCACugGUCGCu--AUGCUGAGCGCGu -5'
32810 3' -54.7 NC_007346.1 + 238255 0.7 0.925629
Target:  5'- -gGUGACUGGCGAcggcggcucaucUGCGACUgGCGaCGg -3'
miRNA:   3'- uaCACUGGUCGCU------------AUGCUGAgCGC-GU- -5'
32810 3' -54.7 NC_007346.1 + 238350 0.72 0.890906
Target:  5'- cUGcGACCGGCGAUgACGGCUCGuCGa- -3'
miRNA:   3'- uACaCUGGUCGCUA-UGCUGAGC-GCgu -5'
32810 3' -54.7 NC_007346.1 + 372503 0.73 0.83322
Target:  5'- -cGUGGuCCGGCGGUGCGuccUUCGCGUg -3'
miRNA:   3'- uaCACU-GGUCGCUAUGCu--GAGCGCGu -5'
32810 3' -54.7 NC_007346.1 + 306652 0.75 0.746644
Target:  5'- uAUGUGGCCucGUGG-GCGACUCGUGCGc -3'
miRNA:   3'- -UACACUGGu-CGCUaUGCUGAGCGCGU- -5'
32810 3' -54.7 NC_007346.1 + 309218 0.75 0.718525
Target:  5'- uGUGUGGCCucGUGG-GCGACUCGUGCGc -3'
miRNA:   3'- -UACACUGGu-CGCUaUGCUGAGCGCGU- -5'
32810 3' -54.7 NC_007346.1 + 373465 1.07 0.013011
Target:  5'- aAUGUGACCAGCGAUACGACUCGCGCAa -3'
miRNA:   3'- -UACACUGGUCGCUAUGCUGAGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.