miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32810 5' -44.9 NC_007346.1 + 386378 0.66 1
Target:  5'- uAUCAUaauuUGAGAAAUGCAUUaGAUCAUc -3'
miRNA:   3'- -UAGUGc---GCUCUUUAUGUAA-CUAGUGu -5'
32810 5' -44.9 NC_007346.1 + 347409 0.67 1
Target:  5'- cUgACGCGGGGAAUuguccuugaACA-UGGUCGCGa -3'
miRNA:   3'- uAgUGCGCUCUUUA---------UGUaACUAGUGU- -5'
32810 5' -44.9 NC_007346.1 + 75027 0.67 1
Target:  5'- -cCACGCGGGuguaucuuuacgGAAUuuaAUGUUGAUCGCAu -3'
miRNA:   3'- uaGUGCGCUC------------UUUA---UGUAACUAGUGU- -5'
32810 5' -44.9 NC_007346.1 + 289696 0.68 1
Target:  5'- gGUCACGCGuuuucgcauUGCAggGAUCAUAa -3'
miRNA:   3'- -UAGUGCGCucuuu----AUGUaaCUAGUGU- -5'
32810 5' -44.9 NC_007346.1 + 146795 0.68 1
Target:  5'- aAUCACuGCGcGAAAUGCAUUcGUUGCAu -3'
miRNA:   3'- -UAGUG-CGCuCUUUAUGUAAcUAGUGU- -5'
32810 5' -44.9 NC_007346.1 + 170924 0.66 1
Target:  5'- uUCGCGCGcGAcacGUGCGUcGAUCAUc -3'
miRNA:   3'- uAGUGCGCuCUu--UAUGUAaCUAGUGu -5'
32810 5' -44.9 NC_007346.1 + 280662 0.67 1
Target:  5'- cGUCACGUGAGGuccagcgACGUggGAUCAa- -3'
miRNA:   3'- -UAGUGCGCUCUuua----UGUAa-CUAGUgu -5'
32810 5' -44.9 NC_007346.1 + 117572 0.68 1
Target:  5'- -gCACGCGuAGAAaaauAUGCAUaacacaUGAUUACAa -3'
miRNA:   3'- uaGUGCGC-UCUU----UAUGUA------ACUAGUGU- -5'
32810 5' -44.9 NC_007346.1 + 8535 0.68 1
Target:  5'- --aACGCGAGAAuauacgcuacGUACAgaGAUCAUg -3'
miRNA:   3'- uagUGCGCUCUU----------UAUGUaaCUAGUGu -5'
32810 5' -44.9 NC_007346.1 + 285231 0.7 0.999995
Target:  5'- -aCACGCGAGAugauauuauaaauGAUGCAcgUGAagUCGCGu -3'
miRNA:   3'- uaGUGCGCUCU-------------UUAUGUa-ACU--AGUGU- -5'
32810 5' -44.9 NC_007346.1 + 278704 0.71 0.999986
Target:  5'- uAUCugGUGcgaAGAAAUGCAUaauauUGAUCACc -3'
miRNA:   3'- -UAGugCGC---UCUUUAUGUA-----ACUAGUGu -5'
32810 5' -44.9 NC_007346.1 + 373030 0.71 0.999973
Target:  5'- uGUUGCGCGAGucGUAuCGcUGGUCACAu -3'
miRNA:   3'- -UAGUGCGCUCuuUAU-GUaACUAGUGU- -5'
32810 5' -44.9 NC_007346.1 + 265792 0.71 0.999964
Target:  5'- uUCAaGUGcucGGAAAUACAUUGAUCAUg -3'
miRNA:   3'- uAGUgCGC---UCUUUAUGUAACUAGUGu -5'
32810 5' -44.9 NC_007346.1 + 239912 0.72 0.999937
Target:  5'- gGUCACGUGAcgGAAGUGCGUaUGA-CGCAc -3'
miRNA:   3'- -UAGUGCGCU--CUUUAUGUA-ACUaGUGU- -5'
32810 5' -44.9 NC_007346.1 + 119624 0.73 0.99986
Target:  5'- cAUCAUGCGGGGuauAUAC-UUGAUCugGu -3'
miRNA:   3'- -UAGUGCGCUCUu--UAUGuAACUAGugU- -5'
32810 5' -44.9 NC_007346.1 + 372733 0.74 0.999543
Target:  5'- cAUCACaUGAGAGAUACAUUGGguaugCACu -3'
miRNA:   3'- -UAGUGcGCUCUUUAUGUAACUa----GUGu -5'
32810 5' -44.9 NC_007346.1 + 121564 0.77 0.995023
Target:  5'- -cCAUGCGAGGAGUGCAggGggCACu -3'
miRNA:   3'- uaGUGCGCUCUUUAUGUaaCuaGUGu -5'
32810 5' -44.9 NC_007346.1 + 373431 0.97 0.309777
Target:  5'- aAUCACGCGAGAAAUACAUUGAUC-CAu -3'
miRNA:   3'- -UAGUGCGCUCUUUAUGUAACUAGuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.