Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32811 | 3' | -54.3 | NC_007346.1 | + | 153877 | 0.66 | 0.995551 |
Target: 5'- cAUGG-GAaaGCCGAcACgguCCCAGUCGAg -3' miRNA: 3'- -UACCuCUgaUGGCUaUG---GGGUCAGCU- -5' |
|||||||
32811 | 3' | -54.3 | NC_007346.1 | + | 5586 | 0.66 | 0.994116 |
Target: 5'- cGUGGGGGg-ACCGGcaUACCCUgaauAGUCGGu -3' miRNA: 3'- -UACCUCUgaUGGCU--AUGGGG----UCAGCU- -5' |
|||||||
32811 | 3' | -54.3 | NC_007346.1 | + | 392672 | 1.07 | 0.014948 |
Target: 5'- aAUGGAGACUACCGAUACCCCAGUCGAu -3' miRNA: 3'- -UACCUCUGAUGGCUAUGGGGUCAGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home