Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32812 | 5' | -44.3 | NC_007346.1 | + | 6405 | 1.16 | 0.047945 |
Target: 5'- uCGGAUGAGGUACUAUCAUAUAGUACCg -3' miRNA: 3'- -GCCUACUCCAUGAUAGUAUAUCAUGG- -5' |
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32812 | 5' | -44.3 | NC_007346.1 | + | 175063 | 0.74 | 0.999848 |
Target: 5'- aCGuGAUGGGGUugaacaGCUAUCGUuUGGUauGCCa -3' miRNA: 3'- -GC-CUACUCCA------UGAUAGUAuAUCA--UGG- -5' |
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32812 | 5' | -44.3 | NC_007346.1 | + | 286124 | 0.74 | 0.999882 |
Target: 5'- aGGAaagauUGAGGccaUGCUAUgGUAUGGUGCa -3' miRNA: 3'- gCCU-----ACUCC---AUGAUAgUAUAUCAUGg -5' |
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32812 | 5' | -44.3 | NC_007346.1 | + | 406799 | 0.73 | 0.99996 |
Target: 5'- aGGAUGuuGGUACacuUGUCAcgGUAGUAUCu -3' miRNA: 3'- gCCUACu-CCAUG---AUAGUa-UAUCAUGG- -5' |
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32812 | 5' | -44.3 | NC_007346.1 | + | 88816 | 0.72 | 0.999996 |
Target: 5'- uCGGAUGAaaucaauguuGGUGC-AUCAUuUAGUGCa -3' miRNA: 3'- -GCCUACU----------CCAUGaUAGUAuAUCAUGg -5' |
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32812 | 5' | -44.3 | NC_007346.1 | + | 17322 | 0.7 | 0.999999 |
Target: 5'- aCGGAUGGaGUACUGUCuucggucgaaauuGUACCg -3' miRNA: 3'- -GCCUACUcCAUGAUAGuauau--------CAUGG- -5' |
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32812 | 5' | -44.3 | NC_007346.1 | + | 263331 | 0.71 | 0.999999 |
Target: 5'- ----cGGGGUAC-GUCAUAaGGUACCg -3' miRNA: 3'- gccuaCUCCAUGaUAGUAUaUCAUGG- -5' |
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32812 | 5' | -44.3 | NC_007346.1 | + | 245746 | 0.67 | 1 |
Target: 5'- gGGAucagUGGGGUACaUAUCAguuUGGguuCCg -3' miRNA: 3'- gCCU----ACUCCAUG-AUAGUau-AUCau-GG- -5' |
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32812 | 5' | -44.3 | NC_007346.1 | + | 119161 | 0.67 | 1 |
Target: 5'- uGGAUGAuucGGUaACUAUCAUcAUAaaACCa -3' miRNA: 3'- gCCUACU---CCA-UGAUAGUA-UAUcaUGG- -5' |
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32812 | 5' | -44.3 | NC_007346.1 | + | 203755 | 0.68 | 1 |
Target: 5'- gGGA--AGGUaaACUGUCAUuUGGUACa -3' miRNA: 3'- gCCUacUCCA--UGAUAGUAuAUCAUGg -5' |
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32812 | 5' | -44.3 | NC_007346.1 | + | 295150 | 0.66 | 1 |
Target: 5'- gCGGcgGAGGUACUG-C----GGUGCUc -3' miRNA: 3'- -GCCuaCUCCAUGAUaGuauaUCAUGG- -5' |
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32812 | 5' | -44.3 | NC_007346.1 | + | 6842 | 0.66 | 1 |
Target: 5'- ---uUGcGGUACUAUaugAUAGUACCu -3' miRNA: 3'- gccuACuCCAUGAUAguaUAUCAUGG- -5' |
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32812 | 5' | -44.3 | NC_007346.1 | + | 292754 | 0.69 | 1 |
Target: 5'- uCGGAUaccGGGU-CUAguUCAUcgGGUACCg -3' miRNA: 3'- -GCCUAc--UCCAuGAU--AGUAuaUCAUGG- -5' |
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32812 | 5' | -44.3 | NC_007346.1 | + | 368823 | 0.69 | 1 |
Target: 5'- aCGGAuuuguaUGGGGUGCUGUaCAUAuugaUAGuUAUCg -3' miRNA: 3'- -GCCU------ACUCCAUGAUA-GUAU----AUC-AUGG- -5' |
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32812 | 5' | -44.3 | NC_007346.1 | + | 201199 | 0.67 | 1 |
Target: 5'- uGuGGUGAuGGUGgUGUag-AUGGUACCg -3' miRNA: 3'- gC-CUACU-CCAUgAUAguaUAUCAUGG- -5' |
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32812 | 5' | -44.3 | NC_007346.1 | + | 312689 | 0.66 | 1 |
Target: 5'- --aGUGAGGUaggcguaucauaagcACUAUCAUAUAcaaUGCCa -3' miRNA: 3'- gccUACUCCA---------------UGAUAGUAUAUc--AUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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