miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32813 3' -43.2 NC_007346.1 + 31100 0.68 1
Target:  5'- aGAUCAAuUACAUgGGCAUgGUCAc-- -3'
miRNA:   3'- -CUAGUUuAUGUAgUUGUGgCAGUuga -5'
32813 3' -43.2 NC_007346.1 + 167147 0.68 1
Target:  5'- --aUAAAUGCAUCGAUGCCGcCAuauACUc -3'
miRNA:   3'- cuaGUUUAUGUAGUUGUGGCaGU---UGA- -5'
32813 3' -43.2 NC_007346.1 + 9344 0.68 1
Target:  5'- ---gAAAUACAUCAGaACCGUCAu-- -3'
miRNA:   3'- cuagUUUAUGUAGUUgUGGCAGUuga -5'
32813 3' -43.2 NC_007346.1 + 202974 0.67 1
Target:  5'- uAUCAGAUGCGUCAucagggcagucggucACAuCCGuaaUCGACUc -3'
miRNA:   3'- cUAGUUUAUGUAGU---------------UGU-GGC---AGUUGA- -5'
32813 3' -43.2 NC_007346.1 + 153793 0.66 1
Target:  5'- aAUCAGGaGCAUCugcuGCACaGUCGGCa -3'
miRNA:   3'- cUAGUUUaUGUAGu---UGUGgCAGUUGa -5'
32813 3' -43.2 NC_007346.1 + 192952 0.66 1
Target:  5'- -cUCuAAUAUAUU--UACCGUCAACUg -3'
miRNA:   3'- cuAGuUUAUGUAGuuGUGGCAGUUGA- -5'
32813 3' -43.2 NC_007346.1 + 336975 0.66 1
Target:  5'- cGAUCAAAUGCAUUAcuaucauuugauuucACACgCGUCc--- -3'
miRNA:   3'- -CUAGUUUAUGUAGU---------------UGUG-GCAGuuga -5'
32813 3' -43.2 NC_007346.1 + 361524 0.71 0.999999
Target:  5'- --cCGGAUAUcuaugCGAUACCGUCGACUg -3'
miRNA:   3'- cuaGUUUAUGua---GUUGUGGCAGUUGA- -5'
32813 3' -43.2 NC_007346.1 + 226981 0.71 0.999999
Target:  5'- uGAUCcGGUACAUCAACAUUaUCAAUa -3'
miRNA:   3'- -CUAGuUUAUGUAGUUGUGGcAGUUGa -5'
32813 3' -43.2 NC_007346.1 + 394638 0.72 0.999999
Target:  5'- cAUCAuAUACAgaugCAACACCGcgCGGCa -3'
miRNA:   3'- cUAGUuUAUGUa---GUUGUGGCa-GUUGa -5'
32813 3' -43.2 NC_007346.1 + 188766 0.71 0.999999
Target:  5'- uGGUCAGAcaUGCAUUAAacCACCGUCAcCg -3'
miRNA:   3'- -CUAGUUU--AUGUAGUU--GUGGCAGUuGa -5'
32813 3' -43.2 NC_007346.1 + 268392 0.72 0.999996
Target:  5'- --gCAGAUGCAUugcaaCGACACCGUCAu-- -3'
miRNA:   3'- cuaGUUUAUGUA-----GUUGUGGCAGUuga -5'
32813 3' -43.2 NC_007346.1 + 260096 0.73 0.999995
Target:  5'- -cUCGAAcGCAUCAGCcaACuCGUCAACUc -3'
miRNA:   3'- cuAGUUUaUGUAGUUG--UG-GCAGUUGA- -5'
32813 3' -43.2 NC_007346.1 + 115625 0.74 0.999935
Target:  5'- -uUCGAAUACAUaccCAGCACCGUCu--- -3'
miRNA:   3'- cuAGUUUAUGUA---GUUGUGGCAGuuga -5'
32813 3' -43.2 NC_007346.1 + 238712 0.74 0.999935
Target:  5'- uGUCAAucgACAgauUCGGCAUCGUCAGCa -3'
miRNA:   3'- cUAGUUua-UGU---AGUUGUGGCAGUUGa -5'
32813 3' -43.2 NC_007346.1 + 168936 0.75 0.999914
Target:  5'- uGGUCGAAUACAUCAcucaGCAUCG-CAAUa -3'
miRNA:   3'- -CUAGUUUAUGUAGU----UGUGGCaGUUGa -5'
32813 3' -43.2 NC_007346.1 + 268968 0.75 0.999856
Target:  5'- cAUCAAGUACAUUAAUACCG-CAAa- -3'
miRNA:   3'- cUAGUUUAUGUAGUUGUGGCaGUUga -5'
32813 3' -43.2 NC_007346.1 + 378268 0.75 0.999856
Target:  5'- --aUggGUGCGUCAAUugCGUCAAUg -3'
miRNA:   3'- cuaGuuUAUGUAGUUGugGCAGUUGa -5'
32813 3' -43.2 NC_007346.1 + 174576 0.75 0.999856
Target:  5'- aGUCAAAUAC-UCGACACUGUUAuGCUa -3'
miRNA:   3'- cUAGUUUAUGuAGUUGUGGCAGU-UGA- -5'
32813 3' -43.2 NC_007346.1 + 119296 0.79 0.994839
Target:  5'- -uUCugguAAUGCGUCAACAUCGUCAAUa -3'
miRNA:   3'- cuAGu---UUAUGUAGUUGUGGCAGUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.