Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32813 | 5' | -45.8 | NC_007346.1 | + | 353221 | 0.66 | 1 |
Target: 5'- cCCAuguuguaagauuGGUGACCAcUGUCCAUGa------ -3' miRNA: 3'- -GGU------------UCACUGGU-ACGGGUACauuaaac -5' |
|||||||
32813 | 5' | -45.8 | NC_007346.1 | + | 20692 | 0.71 | 0.999931 |
Target: 5'- aUCAacAGUGACCAgcgaucaUGCCCAUGUu----- -3' miRNA: 3'- -GGU--UCACUGGU-------ACGGGUACAuuaaac -5' |
|||||||
32813 | 5' | -45.8 | NC_007346.1 | + | 347295 | 0.72 | 0.999886 |
Target: 5'- aCGAGUGACCGUGUuuGUGg------ -3' miRNA: 3'- gGUUCACUGGUACGggUACauuaaac -5' |
|||||||
32813 | 5' | -45.8 | NC_007346.1 | + | 142987 | 0.73 | 0.999625 |
Target: 5'- ----aUGACCAUGCCC-UGUAAcUUGg -3' miRNA: 3'- gguucACUGGUACGGGuACAUUaAAC- -5' |
|||||||
32813 | 5' | -45.8 | NC_007346.1 | + | 293533 | 0.73 | 0.999289 |
Target: 5'- -aAAGUGACUGUGCCUAUGUcAUg-- -3' miRNA: 3'- ggUUCACUGGUACGGGUACAuUAaac -5' |
|||||||
32813 | 5' | -45.8 | NC_007346.1 | + | 296786 | 0.74 | 0.998461 |
Target: 5'- aCUAAGUGACCAaguguaUGCCCAa-UGGUUUGc -3' miRNA: 3'- -GGUUCACUGGU------ACGGGUacAUUAAAC- -5' |
|||||||
32813 | 5' | -45.8 | NC_007346.1 | + | 327849 | 0.77 | 0.991807 |
Target: 5'- uUCGAGUGGCCAUGCCauguucaguagaagaCAUGUAAc--- -3' miRNA: 3'- -GGUUCACUGGUACGG---------------GUACAUUaaac -5' |
|||||||
32813 | 5' | -45.8 | NC_007346.1 | + | 30664 | 1.13 | 0.044491 |
Target: 5'- uCCAAGUGACCAUGCCCAUGUAAUUUGa -3' miRNA: 3'- -GGUUCACUGGUACGGGUACAUUAAAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home