miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32813 5' -45.8 NC_007346.1 + 353221 0.66 1
Target:  5'- cCCAuguuguaagauuGGUGACCAcUGUCCAUGa------ -3'
miRNA:   3'- -GGU------------UCACUGGU-ACGGGUACauuaaac -5'
32813 5' -45.8 NC_007346.1 + 20692 0.71 0.999931
Target:  5'- aUCAacAGUGACCAgcgaucaUGCCCAUGUu----- -3'
miRNA:   3'- -GGU--UCACUGGU-------ACGGGUACAuuaaac -5'
32813 5' -45.8 NC_007346.1 + 347295 0.72 0.999886
Target:  5'- aCGAGUGACCGUGUuuGUGg------ -3'
miRNA:   3'- gGUUCACUGGUACGggUACauuaaac -5'
32813 5' -45.8 NC_007346.1 + 142987 0.73 0.999625
Target:  5'- ----aUGACCAUGCCC-UGUAAcUUGg -3'
miRNA:   3'- gguucACUGGUACGGGuACAUUaAAC- -5'
32813 5' -45.8 NC_007346.1 + 293533 0.73 0.999289
Target:  5'- -aAAGUGACUGUGCCUAUGUcAUg-- -3'
miRNA:   3'- ggUUCACUGGUACGGGUACAuUAaac -5'
32813 5' -45.8 NC_007346.1 + 296786 0.74 0.998461
Target:  5'- aCUAAGUGACCAaguguaUGCCCAa-UGGUUUGc -3'
miRNA:   3'- -GGUUCACUGGU------ACGGGUacAUUAAAC- -5'
32813 5' -45.8 NC_007346.1 + 327849 0.77 0.991807
Target:  5'- uUCGAGUGGCCAUGCCauguucaguagaagaCAUGUAAc--- -3'
miRNA:   3'- -GGUUCACUGGUACGG---------------GUACAUUaaac -5'
32813 5' -45.8 NC_007346.1 + 30664 1.13 0.044491
Target:  5'- uCCAAGUGACCAUGCCCAUGUAAUUUGa -3'
miRNA:   3'- -GGUUCACUGGUACGGGUACAUUAAAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.