miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32815 3' -44.9 NC_007346.1 + 18966 0.66 1
Target:  5'- aGCGgGGGAUUC-----GUGGUGgacGCg -3'
miRNA:   3'- -CGCgCUCUAAGguuuuUACCACaa-CG- -5'
32815 3' -44.9 NC_007346.1 + 338446 0.66 1
Target:  5'- uUGCGGGA--CCAGuuGUGGcUGgUGCa -3'
miRNA:   3'- cGCGCUCUaaGGUUuuUACC-ACaACG- -5'
32815 3' -44.9 NC_007346.1 + 186525 0.67 1
Target:  5'- gGCGCGGGuuacgcAUUCCAG--GUGGUauGaUGCu -3'
miRNA:   3'- -CGCGCUC------UAAGGUUuuUACCA--CaACG- -5'
32815 3' -44.9 NC_007346.1 + 254931 0.67 1
Target:  5'- cGCGCGGuGA--CCu----UGGUGUUGUa -3'
miRNA:   3'- -CGCGCU-CUaaGGuuuuuACCACAACG- -5'
32815 3' -44.9 NC_007346.1 + 253820 0.67 1
Target:  5'- cGCGCGGuGA--CCu----UGGUGUUGUa -3'
miRNA:   3'- -CGCGCU-CUaaGGuuuuuACCACAACG- -5'
32815 3' -44.9 NC_007346.1 + 40870 0.68 1
Target:  5'- aGCGCGcGAUaaugCUAcgGGUGGUGUcGUg -3'
miRNA:   3'- -CGCGCuCUAa---GGUuuUUACCACAaCG- -5'
32815 3' -44.9 NC_007346.1 + 257137 0.68 1
Target:  5'- -aGCGAGAUUCgCAuuAAUcGGUGccgUGUc -3'
miRNA:   3'- cgCGCUCUAAG-GUuuUUA-CCACa--ACG- -5'
32815 3' -44.9 NC_007346.1 + 206660 0.66 1
Target:  5'- gGCGCGAuAUgCCcAGGAUGGUGaccGCc -3'
miRNA:   3'- -CGCGCUcUAaGGuUUUUACCACaa-CG- -5'
32815 3' -44.9 NC_007346.1 + 223933 0.66 1
Target:  5'- gGCG-GGGAUUCCGggGGGAUGGUacUGUu -3'
miRNA:   3'- -CGCgCUCUAAGGU--UUUUACCAcaACG- -5'
32815 3' -44.9 NC_007346.1 + 138142 0.68 1
Target:  5'- -aGCGAGAgcgugcUCgCGuauGGAGUGGUGUgUGCg -3'
miRNA:   3'- cgCGCUCUa-----AG-GU---UUUUACCACA-ACG- -5'
32815 3' -44.9 NC_007346.1 + 19851 0.69 1
Target:  5'- uUGCGGGAUUCCAAAGAcgcaUGcaagGUUGg -3'
miRNA:   3'- cGCGCUCUAAGGUUUUU----ACca--CAACg -5'
32815 3' -44.9 NC_007346.1 + 253967 0.68 1
Target:  5'- cGCGCGgagaAGGUggCCAuuaAGGcgGGUGUgUGCa -3'
miRNA:   3'- -CGCGC----UCUAa-GGU---UUUuaCCACA-ACG- -5'
32815 3' -44.9 NC_007346.1 + 361659 0.7 0.999999
Target:  5'- cCGCG-GAUUCCAcuGcgGGUaagaaguuuGUUGCa -3'
miRNA:   3'- cGCGCuCUAAGGUuuUuaCCA---------CAACG- -5'
32815 3' -44.9 NC_007346.1 + 383206 0.69 0.999999
Target:  5'- cCGCGAGAUauUCCccauauAAAAGUGGUGa--- -3'
miRNA:   3'- cGCGCUCUA--AGG------UUUUUACCACaacg -5'
32815 3' -44.9 NC_007346.1 + 313846 0.7 0.999997
Target:  5'- cGCGCGAGAcugUCUAugg--GGUaUUGCa -3'
miRNA:   3'- -CGCGCUCUa--AGGUuuuuaCCAcAACG- -5'
32815 3' -44.9 NC_007346.1 + 345317 0.7 0.999997
Target:  5'- uUGCauGAUUCCAAAGAUGGUGa--- -3'
miRNA:   3'- cGCGcuCUAAGGUUUUUACCACaacg -5'
32815 3' -44.9 NC_007346.1 + 259901 0.71 0.999994
Target:  5'- cGCGCGAGuucuuuuuugUCCGAcgGUGGccauuuagggaacugGUUGCg -3'
miRNA:   3'- -CGCGCUCua--------AGGUUuuUACCa--------------CAACG- -5'
32815 3' -44.9 NC_007346.1 + 264588 0.72 0.999947
Target:  5'- uUGCGAGAUUCCAAgcgcucggGAAUGagucuGUGUcGCg -3'
miRNA:   3'- cGCGCUCUAAGGUU--------UUUAC-----CACAaCG- -5'
32815 3' -44.9 NC_007346.1 + 46503 1.16 0.037404
Target:  5'- cGCGCGAGAUUCCAAAAAUGGUGUUGCc -3'
miRNA:   3'- -CGCGCUCUAAGGUUUUUACCACAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.