miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32815 5' -50.3 NC_007346.1 + 216580 0.67 0.999702
Target:  5'- uGGCAcgCGCgAAUGuCGGCGUUUCGCc -3'
miRNA:   3'- gUUGUuaGUG-UUACcGCUGCGGAGCG- -5'
32815 5' -50.3 NC_007346.1 + 255844 0.67 0.999629
Target:  5'- -uGCAGUCACGugguauagcaAUGGCGgGCGCaUUGCc -3'
miRNA:   3'- guUGUUAGUGU----------UACCGC-UGCGgAGCG- -5'
32815 5' -50.3 NC_007346.1 + 163176 0.68 0.999437
Target:  5'- -uACAGUCGCAGUGGUGAUGgg-CGg -3'
miRNA:   3'- guUGUUAGUGUUACCGCUGCggaGCg -5'
32815 5' -50.3 NC_007346.1 + 274413 0.68 0.999437
Target:  5'- cCGugAuUgGCA-UGGCGAcugcgucaaaCGCCUCGCg -3'
miRNA:   3'- -GUugUuAgUGUuACCGCU----------GCGGAGCG- -5'
32815 5' -50.3 NC_007346.1 + 261151 0.68 0.999402
Target:  5'- uGGCGAguUgGCGAguugGGCGACGCgcguccgaguguggCUCGCg -3'
miRNA:   3'- gUUGUU--AgUGUUa---CCGCUGCG--------------GAGCG- -5'
32815 5' -50.3 NC_007346.1 + 128560 0.68 0.999312
Target:  5'- uGGCGGUgGCGgugAUGGCGAUGCagaUgGCg -3'
miRNA:   3'- gUUGUUAgUGU---UACCGCUGCGg--AgCG- -5'
32815 5' -50.3 NC_007346.1 + 135373 0.68 0.999164
Target:  5'- aGACGAUaagccauaCGCAGUGGaCGACGCCa--- -3'
miRNA:   3'- gUUGUUA--------GUGUUACC-GCUGCGGagcg -5'
32815 5' -50.3 NC_007346.1 + 349803 0.68 0.99899
Target:  5'- aCGACGGcgGCGGUGGCGGCGgCg-GCg -3'
miRNA:   3'- -GUUGUUagUGUUACCGCUGCgGagCG- -5'
32815 5' -50.3 NC_007346.1 + 264510 0.69 0.998785
Target:  5'- --cCGGaCACAuuuuccGGUGACGUCUCGCg -3'
miRNA:   3'- guuGUUaGUGUua----CCGCUGCGGAGCG- -5'
32815 5' -50.3 NC_007346.1 + 322612 0.69 0.998785
Target:  5'- gCAACAgcGUgGCGcgGGUGcauUGCCUCGUa -3'
miRNA:   3'- -GUUGU--UAgUGUuaCCGCu--GCGGAGCG- -5'
32815 5' -50.3 NC_007346.1 + 80136 0.69 0.998545
Target:  5'- -uGCAAUCACAucagGUGGaUGAUGCCagaaaUCGUg -3'
miRNA:   3'- guUGUUAGUGU----UACC-GCUGCGG-----AGCG- -5'
32815 5' -50.3 NC_007346.1 + 238937 0.69 0.998545
Target:  5'- gGAUGAUgACGAgcugaUGGCGGCGaugaaCUCGCc -3'
miRNA:   3'- gUUGUUAgUGUU-----ACCGCUGCg----GAGCG- -5'
32815 5' -50.3 NC_007346.1 + 181851 0.69 0.998545
Target:  5'- uGGCGGUgGCAAUGGCGGCGgUgguggUgGCg -3'
miRNA:   3'- gUUGUUAgUGUUACCGCUGCgG-----AgCG- -5'
32815 5' -50.3 NC_007346.1 + 322884 0.69 0.998267
Target:  5'- gAGCAcgUACAAUGGCuGCGUCUaaaGUa -3'
miRNA:   3'- gUUGUuaGUGUUACCGcUGCGGAg--CG- -5'
32815 5' -50.3 NC_007346.1 + 71285 0.69 0.997945
Target:  5'- gCAACAucuaauggaGUCAUAuaacGUGGauuaGCGCCUCGCu -3'
miRNA:   3'- -GUUGU---------UAGUGU----UACCgc--UGCGGAGCG- -5'
32815 5' -50.3 NC_007346.1 + 50010 0.7 0.995492
Target:  5'- uGGCGAUgGCGaggcggauuGUGGCGACGCUggUgGCg -3'
miRNA:   3'- gUUGUUAgUGU---------UACCGCUGCGG--AgCG- -5'
32815 5' -50.3 NC_007346.1 + 300221 0.7 0.995492
Target:  5'- --cCAAUC-CAauGUGGCGAUG-CUCGCg -3'
miRNA:   3'- guuGUUAGuGU--UACCGCUGCgGAGCG- -5'
32815 5' -50.3 NC_007346.1 + 342315 0.71 0.994003
Target:  5'- cCAGCAcUUGguGUugGGUGGCGCCUUGCa -3'
miRNA:   3'- -GUUGUuAGUguUA--CCGCUGCGGAGCG- -5'
32815 5' -50.3 NC_007346.1 + 248711 0.71 0.991051
Target:  5'- cCAACAAUUuauuAUGGCaGCGCCUaCGCc -3'
miRNA:   3'- -GUUGUUAGugu-UACCGcUGCGGA-GCG- -5'
32815 5' -50.3 NC_007346.1 + 134156 0.72 0.985459
Target:  5'- -uACAAUCACAAUGuccGCGGCGCgUC-Ca -3'
miRNA:   3'- guUGUUAGUGUUAC---CGCUGCGgAGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.