miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32816 3' -52.8 NC_007346.1 + 287993 0.66 0.999131
Target:  5'- -uAUGCAUCCGCGGCAaaaCACauaCCAg -3'
miRNA:   3'- cuUACGUAGGUGCUGUgc-GUGca-GGU- -5'
32816 3' -52.8 NC_007346.1 + 113275 0.66 0.999131
Target:  5'- uAGUGCAUCCaAUGGCAauaGCAUucuUCCAa -3'
miRNA:   3'- cUUACGUAGG-UGCUGUg--CGUGc--AGGU- -5'
32816 3' -52.8 NC_007346.1 + 293471 0.66 0.998953
Target:  5'- ---aGCGUUCACGACugGaggcguauaCGCGUUCGc -3'
miRNA:   3'- cuuaCGUAGGUGCUGugC---------GUGCAGGU- -5'
32816 3' -52.8 NC_007346.1 + 170926 0.66 0.998953
Target:  5'- ---cGCG--CGCGACACGUGCGUCg- -3'
miRNA:   3'- cuuaCGUagGUGCUGUGCGUGCAGgu -5'
32816 3' -52.8 NC_007346.1 + 273669 0.66 0.998745
Target:  5'- ---cGCAUCCGCacggcgucuuGACGaaauccgaGCACGUCCc -3'
miRNA:   3'- cuuaCGUAGGUG----------CUGUg-------CGUGCAGGu -5'
32816 3' -52.8 NC_007346.1 + 192519 0.66 0.998502
Target:  5'- cGAAUGCGUggAgGGCAuuCGCGCGUUCGa -3'
miRNA:   3'- -CUUACGUAggUgCUGU--GCGUGCAGGU- -5'
32816 3' -52.8 NC_007346.1 + 86174 0.66 0.998502
Target:  5'- ---aGCG-CCugGAC-CGCACG-CCAc -3'
miRNA:   3'- cuuaCGUaGGugCUGuGCGUGCaGGU- -5'
32816 3' -52.8 NC_007346.1 + 130140 0.66 0.998502
Target:  5'- ---aGCAUCCGCucgggauauGAUcaACGCACGUUCu -3'
miRNA:   3'- cuuaCGUAGGUG---------CUG--UGCGUGCAGGu -5'
32816 3' -52.8 NC_007346.1 + 138173 0.66 0.998502
Target:  5'- --uUGCGUCCGgacCGGgGCGCACGagCGg -3'
miRNA:   3'- cuuACGUAGGU---GCUgUGCGUGCagGU- -5'
32816 3' -52.8 NC_007346.1 + 347504 0.66 0.998221
Target:  5'- aGAAUGCAUCCGCuugccaaugGugAacCAUGUCCAg -3'
miRNA:   3'- -CUUACGUAGGUG---------CugUgcGUGCAGGU- -5'
32816 3' -52.8 NC_007346.1 + 322095 0.67 0.997897
Target:  5'- --uUGCAUUCGCGAUAgcaagUGCAUgGUCCGa -3'
miRNA:   3'- cuuACGUAGGUGCUGU-----GCGUG-CAGGU- -5'
32816 3' -52.8 NC_007346.1 + 114349 0.67 0.997897
Target:  5'- -uAUGCAUUCGCGACAuCGUugGcaCCu -3'
miRNA:   3'- cuUACGUAGGUGCUGU-GCGugCa-GGu -5'
32816 3' -52.8 NC_007346.1 + 252774 0.67 0.997526
Target:  5'- aAAUGCcugCCAUGAaGCGCACGgucUCCGa -3'
miRNA:   3'- cUUACGua-GGUGCUgUGCGUGC---AGGU- -5'
32816 3' -52.8 NC_007346.1 + 205147 0.67 0.996962
Target:  5'- uGGcgGCAacggUCCGCGAUACGCAaacaaugacgauauUGUUCAa -3'
miRNA:   3'- -CUuaCGU----AGGUGCUGUGCGU--------------GCAGGU- -5'
32816 3' -52.8 NC_007346.1 + 135177 0.67 0.996067
Target:  5'- --uUGCAUCCACuGCAaugGUugGUCUAu -3'
miRNA:   3'- cuuACGUAGGUGcUGUg--CGugCAGGU- -5'
32816 3' -52.8 NC_007346.1 + 238507 0.67 0.995448
Target:  5'- cGAccGCGUCCACGACGCGU--GUUg- -3'
miRNA:   3'- -CUuaCGUAGGUGCUGUGCGugCAGgu -5'
32816 3' -52.8 NC_007346.1 + 300243 0.68 0.994751
Target:  5'- cGAAUGCAUCUACGGCAU---CG-CCAa -3'
miRNA:   3'- -CUUACGUAGGUGCUGUGcguGCaGGU- -5'
32816 3' -52.8 NC_007346.1 + 264962 0.68 0.993969
Target:  5'- aAAUGcCGUUCugGACGCGCgagACGUCa- -3'
miRNA:   3'- cUUAC-GUAGGugCUGUGCG---UGCAGgu -5'
32816 3' -52.8 NC_007346.1 + 66031 0.68 0.993886
Target:  5'- aGAGUGCGUCCagACGuaccauuuaaaauGCGCGCACcG-CCAa -3'
miRNA:   3'- -CUUACGUAGG--UGC-------------UGUGCGUG-CaGGU- -5'
32816 3' -52.8 NC_007346.1 + 46928 0.68 0.993098
Target:  5'- ---aGCAacUCCACGGCcCGUuuGUCCAg -3'
miRNA:   3'- cuuaCGU--AGGUGCUGuGCGugCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.