miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32816 5' -48.7 NC_007346.1 + 255056 0.66 0.999994
Target:  5'- aGGCGucuGGGUGCAgugugcUCGCAAacuGAGCg -3'
miRNA:   3'- -UCGC---CCCACGUau----AGCGUUcuuUUUG- -5'
32816 5' -48.7 NC_007346.1 + 364536 0.66 0.999994
Target:  5'- uGUGGGGUGaca---GCAuGAAGAACu -3'
miRNA:   3'- uCGCCCCACguauagCGUuCUUUUUG- -5'
32816 5' -48.7 NC_007346.1 + 226772 0.66 0.999992
Target:  5'- uGGCaGGGGUGCGgg-C-CGGGGAuuACa -3'
miRNA:   3'- -UCG-CCCCACGUauaGcGUUCUUuuUG- -5'
32816 5' -48.7 NC_007346.1 + 228922 0.66 0.999989
Target:  5'- aAGUGGGGauaugGCAUGUCauuauGGGAAGAUa -3'
miRNA:   3'- -UCGCCCCa----CGUAUAGcgu--UCUUUUUG- -5'
32816 5' -48.7 NC_007346.1 + 181971 0.66 0.999979
Target:  5'- aGGUGGGGgugGCGgaggugAUgGCGGGGGugGCg -3'
miRNA:   3'- -UCGCCCCa--CGUa-----UAgCGUUCUUuuUG- -5'
32816 5' -48.7 NC_007346.1 + 322621 0.67 0.999972
Target:  5'- uGGCGcGGGUGCAUugccUCGUAuugguGAAGGu- -3'
miRNA:   3'- -UCGC-CCCACGUAu---AGCGUu----CUUUUug -5'
32816 5' -48.7 NC_007346.1 + 60379 0.67 0.999962
Target:  5'- cGGUGGGGUGgGUggUGguGGAGAc-- -3'
miRNA:   3'- -UCGCCCCACgUAuaGCguUCUUUuug -5'
32816 5' -48.7 NC_007346.1 + 145922 0.67 0.999962
Target:  5'- uGCGGGGUauaCcgGUCGC--GGAAAACg -3'
miRNA:   3'- uCGCCCCAc--GuaUAGCGuuCUUUUUG- -5'
32816 5' -48.7 NC_007346.1 + 5205 0.67 0.999962
Target:  5'- -aCuGGGUGCAUuaaCGCGGGAAAAGg -3'
miRNA:   3'- ucGcCCCACGUAua-GCGUUCUUUUUg -5'
32816 5' -48.7 NC_007346.1 + 198863 0.67 0.999934
Target:  5'- cGGCGGGGUGguUG--GUggGAuauAACa -3'
miRNA:   3'- -UCGCCCCACguAUagCGuuCUuu-UUG- -5'
32816 5' -48.7 NC_007346.1 + 372979 0.67 0.999934
Target:  5'- uGGCGacgcuaGGUGCAUcUCGUAAGAuuAAUa -3'
miRNA:   3'- -UCGCc-----CCACGUAuAGCGUUCUuuUUG- -5'
32816 5' -48.7 NC_007346.1 + 306397 0.67 0.999914
Target:  5'- gAGaCGGaGGUGCAgccgugcggCGCGAGGGAAcgGCu -3'
miRNA:   3'- -UC-GCC-CCACGUaua------GCGUUCUUUU--UG- -5'
32816 5' -48.7 NC_007346.1 + 224958 0.67 0.999914
Target:  5'- uGUGGcauauugacGGUGCAauguuUAUCGCAGGcAAAACu -3'
miRNA:   3'- uCGCC---------CCACGU-----AUAGCGUUCuUUUUG- -5'
32816 5' -48.7 NC_007346.1 + 283569 0.68 0.999889
Target:  5'- cAGUugGGGGUGagcGUCGCAAGgcAAAUg -3'
miRNA:   3'- -UCG--CCCCACguaUAGCGUUCuuUUUG- -5'
32816 5' -48.7 NC_007346.1 + 225952 0.68 0.999889
Target:  5'- gGGCGGGGagacUGCAguacaccgagcaUGUCGacucAGGGAAACg -3'
miRNA:   3'- -UCGCCCC----ACGU------------AUAGCgu--UCUUUUUG- -5'
32816 5' -48.7 NC_007346.1 + 134026 0.68 0.99977
Target:  5'- aAGCGGGGacggccccagaUGCAgAUCa-GAGAGAAGCa -3'
miRNA:   3'- -UCGCCCC-----------ACGUaUAGcgUUCUUUUUG- -5'
32816 5' -48.7 NC_007346.1 + 177834 0.68 0.99971
Target:  5'- uAGUGcGGGUGCGgg-CGCAGGugcGGCu -3'
miRNA:   3'- -UCGC-CCCACGUauaGCGUUCuuuUUG- -5'
32816 5' -48.7 NC_007346.1 + 349778 0.69 0.999638
Target:  5'- cGGCGGcGGUgGCGUGagGCAgcAGGAuAACa -3'
miRNA:   3'- -UCGCC-CCA-CGUAUagCGU--UCUUuUUG- -5'
32816 5' -48.7 NC_007346.1 + 310554 0.69 0.999638
Target:  5'- aGGUgGGGGUGaagGUGagGCGGGGGAGGCg -3'
miRNA:   3'- -UCG-CCCCACg--UAUagCGUUCUUUUUG- -5'
32816 5' -48.7 NC_007346.1 + 405237 0.69 0.99955
Target:  5'- uAGCcuauGGUGCAUAUUGCAAGuagugcGGAACa -3'
miRNA:   3'- -UCGcc--CCACGUAUAGCGUUCu-----UUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.