miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32817 5' -47 NC_007346.1 + 292451 0.66 1
Target:  5'- aCCA-UCUUGGCcgccuuGUGGUCGGCUu -3'
miRNA:   3'- -GGUcAGAACUGuuauc-UACCAGCUGA- -5'
32817 5' -47 NC_007346.1 + 165554 0.66 1
Target:  5'- cCCAGgugCgagUGGCGA-AGGUGG-CGGCg -3'
miRNA:   3'- -GGUCa--Ga--ACUGUUaUCUACCaGCUGa -5'
32817 5' -47 NC_007346.1 + 56673 0.66 1
Target:  5'- cCCGGUCcaGGCGGUGG-UGGUgGAg- -3'
miRNA:   3'- -GGUCAGaaCUGUUAUCuACCAgCUga -5'
32817 5' -47 NC_007346.1 + 238186 0.66 1
Target:  5'- gCAcGUCUcGGCAGUGGAgaGGUCGGu- -3'
miRNA:   3'- gGU-CAGAaCUGUUAUCUa-CCAGCUga -5'
32817 5' -47 NC_007346.1 + 110175 0.66 1
Target:  5'- uCCAGg---GGCAacugGUGGAUGGgccgCGACa -3'
miRNA:   3'- -GGUCagaaCUGU----UAUCUACCa---GCUGa -5'
32817 5' -47 NC_007346.1 + 181267 0.67 1
Target:  5'- cCCGGaCUUGGgGAUGGcagggucuaggaaAUGGUCGugUu -3'
miRNA:   3'- -GGUCaGAACUgUUAUC-------------UACCAGCugA- -5'
32817 5' -47 NC_007346.1 + 162047 0.66 1
Target:  5'- -aAGUCgcaacaucgaUGGCAAUGGGUGGU-GGCUu -3'
miRNA:   3'- ggUCAGa---------ACUGUUAUCUACCAgCUGA- -5'
32817 5' -47 NC_007346.1 + 311637 0.67 1
Target:  5'- gCGGUaaUGGCGAUggAGAUGG-CGGCg -3'
miRNA:   3'- gGUCAgaACUGUUA--UCUACCaGCUGa -5'
32817 5' -47 NC_007346.1 + 310082 0.67 1
Target:  5'- gCGGUaaUGGCGAUggAGAUGG-CGGCg -3'
miRNA:   3'- gGUCAgaACUGUUA--UCUACCaGCUGa -5'
32817 5' -47 NC_007346.1 + 248376 0.66 1
Target:  5'- aCAGUauacaCUUGACGA-AGAUGGUaaaaaCGGCg -3'
miRNA:   3'- gGUCA-----GAACUGUUaUCUACCA-----GCUGa -5'
32817 5' -47 NC_007346.1 + 61147 0.67 0.999999
Target:  5'- gCCGGUgaUGGCGGUGGA-GGUaaUGGCg -3'
miRNA:   3'- -GGUCAgaACUGUUAUCUaCCA--GCUGa -5'
32817 5' -47 NC_007346.1 + 323186 0.68 0.999997
Target:  5'- --cGUCUUGGacuucuaucucuUGAUGGAUGGUCGAa- -3'
miRNA:   3'- gguCAGAACU------------GUUAUCUACCAGCUga -5'
32817 5' -47 NC_007346.1 + 128552 0.69 0.999989
Target:  5'- gCGGUgaUGGCGAUgcAGAUGG-CGGCg -3'
miRNA:   3'- gGUCAgaACUGUUA--UCUACCaGCUGa -5'
32817 5' -47 NC_007346.1 + 350762 0.73 0.998848
Target:  5'- gCAGag--GGCGGUGGGUGGUCGAUUu -3'
miRNA:   3'- gGUCagaaCUGUUAUCUACCAGCUGA- -5'
32817 5' -47 NC_007346.1 + 91109 1.12 0.037627
Target:  5'- aCCAGUCUUGACAAUAGAUGGUCGACUg -3'
miRNA:   3'- -GGUCAGAACUGUUAUCUACCAGCUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.