Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32818 | 3' | -49.5 | NC_007346.1 | + | 357062 | 0.66 | 0.999957 |
Target: 5'- uGUUAC-UGCuccaguugacaUC-CCAGUCCCGACGa -3' miRNA: 3'- -UAAUGcACGua---------AGaGGUUAGGGCUGC- -5' |
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32818 | 3' | -49.5 | NC_007346.1 | + | 257403 | 0.66 | 0.999969 |
Target: 5'- --gGCGgauUGCGUUCUUggUAAUUCCGAUGg -3' miRNA: 3'- uaaUGC---ACGUAAGAG--GUUAGGGCUGC- -5' |
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32818 | 3' | -49.5 | NC_007346.1 | + | 397666 | 0.67 | 0.99993 |
Target: 5'- ----aGUGCAUcucCUCCAAUCCgGAUc -3' miRNA: 3'- uaaugCACGUAa--GAGGUUAGGgCUGc -5' |
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32818 | 3' | -49.5 | NC_007346.1 | + | 74701 | 0.67 | 0.999909 |
Target: 5'- -aUACGcaUGCAcugUUCCGAUCCCGGg- -3' miRNA: 3'- uaAUGC--ACGUaa-GAGGUUAGGGCUgc -5' |
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32818 | 3' | -49.5 | NC_007346.1 | + | 338246 | 0.67 | 0.999851 |
Target: 5'- --cACGUGUuggUUUUAGUCCCGGCa -3' miRNA: 3'- uaaUGCACGuaaGAGGUUAGGGCUGc -5' |
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32818 | 3' | -49.5 | NC_007346.1 | + | 244882 | 0.67 | 0.99993 |
Target: 5'- --cGCGUGCGUcCUCCucaCuuGACGc -3' miRNA: 3'- uaaUGCACGUAaGAGGuuaGggCUGC- -5' |
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32818 | 3' | -49.5 | NC_007346.1 | + | 129703 | 0.68 | 0.999628 |
Target: 5'- --aACGUGCGUUgaUCAuAUCCCGAgCGg -3' miRNA: 3'- uaaUGCACGUAAgaGGU-UAGGGCU-GC- -5' |
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32818 | 3' | -49.5 | NC_007346.1 | + | 360863 | 0.69 | 0.998767 |
Target: 5'- -aUugGUGCAUUUggUgCGAUCCCGgaACGg -3' miRNA: 3'- uaAugCACGUAAG--AgGUUAGGGC--UGC- -5' |
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32818 | 3' | -49.5 | NC_007346.1 | + | 360917 | 0.69 | 0.999155 |
Target: 5'- --gAUGUGUAUUCUUCAAUCuuGgACa -3' miRNA: 3'- uaaUGCACGUAAGAGGUUAGggC-UGc -5' |
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32818 | 3' | -49.5 | NC_007346.1 | + | 227891 | 0.7 | 0.998237 |
Target: 5'- --gGCG-GCG-UCUCaguCAAUCCCGGCGg -3' miRNA: 3'- uaaUGCaCGUaAGAG---GUUAGGGCUGC- -5' |
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32818 | 3' | -49.5 | NC_007346.1 | + | 227849 | 0.7 | 0.998237 |
Target: 5'- --gGCG-GCG-UCUCaguCAAUCCCGGCGg -3' miRNA: 3'- uaaUGCaCGUaAGAG---GUUAGGGCUGC- -5' |
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32818 | 3' | -49.5 | NC_007346.1 | + | 16109 | 0.7 | 0.997527 |
Target: 5'- -----uUGCAUgUUCCGGUCCCGAUGa -3' miRNA: 3'- uaaugcACGUAaGAGGUUAGGGCUGC- -5' |
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32818 | 3' | -49.5 | NC_007346.1 | + | 286931 | 0.7 | 0.998522 |
Target: 5'- --gGCGUGCAUUUUCCAccaagAUCCaaacuCGGCa -3' miRNA: 3'- uaaUGCACGUAAGAGGU-----UAGG-----GCUGc -5' |
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32818 | 3' | -49.5 | NC_007346.1 | + | 218640 | 0.7 | 0.99709 |
Target: 5'- -cUGCGUGUAUaUUCCaAAUCCCG-CGa -3' miRNA: 3'- uaAUGCACGUAaGAGG-UUAGGGCuGC- -5' |
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32818 | 3' | -49.5 | NC_007346.1 | + | 280443 | 0.71 | 0.996026 |
Target: 5'- --cGCG-GCAgggUCgcauccaCCAAUCCCGGCGg -3' miRNA: 3'- uaaUGCaCGUa--AGa------GGUUAGGGCUGC- -5' |
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32818 | 3' | -49.5 | NC_007346.1 | + | 98227 | 1.07 | 0.04098 |
Target: 5'- cAUUACGUGCAUUCUCCAAUCCCGACGc -3' miRNA: 3'- -UAAUGCACGUAAGAGGUUAGGGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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