miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32818 5' -56.3 NC_007346.1 + 109521 0.66 0.987929
Target:  5'- cCACGUCcuuGGAAacgGGGCUgugcguauugaUGCuGGCGUg -3'
miRNA:   3'- -GUGCAGu--UCUUg--CCCGA-----------GCGuCCGCG- -5'
32818 5' -56.3 NC_007346.1 + 177835 0.66 0.983185
Target:  5'- --aGUgCGGGuGCGGGC--GCAGGUGCg -3'
miRNA:   3'- gugCA-GUUCuUGCCCGagCGUCCGCG- -5'
32818 5' -56.3 NC_007346.1 + 215831 0.66 0.981326
Target:  5'- aUugGUCGaugcugccgcacGGGuacauCGGGUaCGCGGGUGCu -3'
miRNA:   3'- -GugCAGU------------UCUu----GCCCGaGCGUCCGCG- -5'
32818 5' -56.3 NC_007346.1 + 257132 0.67 0.974824
Target:  5'- aCAUGgaaGGGAAaGGGCUCGC--GCGCg -3'
miRNA:   3'- -GUGCag-UUCUUgCCCGAGCGucCGCG- -5'
32818 5' -56.3 NC_007346.1 + 307167 0.68 0.96056
Target:  5'- gGCGgCGGcGACGGGCUgGgGGGCGg -3'
miRNA:   3'- gUGCaGUUcUUGCCCGAgCgUCCGCg -5'
32818 5' -56.3 NC_007346.1 + 254130 0.68 0.960228
Target:  5'- gCACGUCAAaAACGGGCagCGCAucaugaacuuuauGGUGa -3'
miRNA:   3'- -GUGCAGUUcUUGCCCGa-GCGU-------------CCGCg -5'
32818 5' -56.3 NC_007346.1 + 255241 0.68 0.960228
Target:  5'- gCACGUCAAaAACGGGCagCGCAucaugaacuuuauGGUGa -3'
miRNA:   3'- -GUGCAGUUcUUGCCCGa-GCGU-------------CCGCg -5'
32818 5' -56.3 NC_007346.1 + 307383 0.68 0.957148
Target:  5'- gGCgGUgGAGAugGcGGCggaGCAGGCGg -3'
miRNA:   3'- gUG-CAgUUCUugC-CCGag-CGUCCGCg -5'
32818 5' -56.3 NC_007346.1 + 292166 0.69 0.943216
Target:  5'- uCGCGcucggCGGGuauggcugccccgguGGCGGGUUCGuCAGGUGCg -3'
miRNA:   3'- -GUGCa----GUUC---------------UUGCCCGAGC-GUCCGCG- -5'
32818 5' -56.3 NC_007346.1 + 138147 0.69 0.941506
Target:  5'- gGCGgagCGAGAGCGuGCUCGCGuauggaguGGUGUg -3'
miRNA:   3'- gUGCa--GUUCUUGCcCGAGCGU--------CCGCG- -5'
32818 5' -56.3 NC_007346.1 + 98261 1.1 0.006444
Target:  5'- cCACGUCAAGAACGGGCUCGCAGGCGCc -3'
miRNA:   3'- -GUGCAGUUCUUGCCCGAGCGUCCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.