Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32818 | 5' | -56.3 | NC_007346.1 | + | 109521 | 0.66 | 0.987929 |
Target: 5'- cCACGUCcuuGGAAacgGGGCUgugcguauugaUGCuGGCGUg -3' miRNA: 3'- -GUGCAGu--UCUUg--CCCGA-----------GCGuCCGCG- -5' |
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32818 | 5' | -56.3 | NC_007346.1 | + | 177835 | 0.66 | 0.983185 |
Target: 5'- --aGUgCGGGuGCGGGC--GCAGGUGCg -3' miRNA: 3'- gugCA-GUUCuUGCCCGagCGUCCGCG- -5' |
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32818 | 5' | -56.3 | NC_007346.1 | + | 215831 | 0.66 | 0.981326 |
Target: 5'- aUugGUCGaugcugccgcacGGGuacauCGGGUaCGCGGGUGCu -3' miRNA: 3'- -GugCAGU------------UCUu----GCCCGaGCGUCCGCG- -5' |
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32818 | 5' | -56.3 | NC_007346.1 | + | 257132 | 0.67 | 0.974824 |
Target: 5'- aCAUGgaaGGGAAaGGGCUCGC--GCGCg -3' miRNA: 3'- -GUGCag-UUCUUgCCCGAGCGucCGCG- -5' |
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32818 | 5' | -56.3 | NC_007346.1 | + | 307167 | 0.68 | 0.96056 |
Target: 5'- gGCGgCGGcGACGGGCUgGgGGGCGg -3' miRNA: 3'- gUGCaGUUcUUGCCCGAgCgUCCGCg -5' |
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32818 | 5' | -56.3 | NC_007346.1 | + | 254130 | 0.68 | 0.960228 |
Target: 5'- gCACGUCAAaAACGGGCagCGCAucaugaacuuuauGGUGa -3' miRNA: 3'- -GUGCAGUUcUUGCCCGa-GCGU-------------CCGCg -5' |
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32818 | 5' | -56.3 | NC_007346.1 | + | 307383 | 0.68 | 0.957148 |
Target: 5'- gGCgGUgGAGAugGcGGCggaGCAGGCGg -3' miRNA: 3'- gUG-CAgUUCUugC-CCGag-CGUCCGCg -5' |
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32818 | 5' | -56.3 | NC_007346.1 | + | 255241 | 0.68 | 0.960228 |
Target: 5'- gCACGUCAAaAACGGGCagCGCAucaugaacuuuauGGUGa -3' miRNA: 3'- -GUGCAGUUcUUGCCCGa-GCGU-------------CCGCg -5' |
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32818 | 5' | -56.3 | NC_007346.1 | + | 138147 | 0.69 | 0.941506 |
Target: 5'- gGCGgagCGAGAGCGuGCUCGCGuauggaguGGUGUg -3' miRNA: 3'- gUGCa--GUUCUUGCcCGAGCGU--------CCGCG- -5' |
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32818 | 5' | -56.3 | NC_007346.1 | + | 292166 | 0.69 | 0.943216 |
Target: 5'- uCGCGcucggCGGGuauggcugccccgguGGCGGGUUCGuCAGGUGCg -3' miRNA: 3'- -GUGCa----GUUC---------------UUGCCCGAGC-GUCCGCG- -5' |
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32818 | 5' | -56.3 | NC_007346.1 | + | 98261 | 1.1 | 0.006444 |
Target: 5'- cCACGUCAAGAACGGGCUCGCAGGCGCc -3' miRNA: 3'- -GUGCAGUUCUUGCCCGAGCGUCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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