miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32819 3' -54.8 NC_007346.1 + 268290 0.66 0.996562
Target:  5'- uGCugCGuACaGUGUgCCAAugGGUUCAc -3'
miRNA:   3'- -CGugGCcUG-CGCGaGGUUugCCAAGU- -5'
32819 3' -54.8 NC_007346.1 + 337683 0.66 0.996019
Target:  5'- uGCACgUGGACG-GUUCCAugUGGUUg- -3'
miRNA:   3'- -CGUG-GCCUGCgCGAGGUuuGCCAAgu -5'
32819 3' -54.8 NC_007346.1 + 254072 0.66 0.995408
Target:  5'- cGCACCauguCGCGCguccCCucGCGGUUCc -3'
miRNA:   3'- -CGUGGccu-GCGCGa---GGuuUGCCAAGu -5'
32819 3' -54.8 NC_007346.1 + 255183 0.66 0.995408
Target:  5'- cGCACCauguCGCGCguccCCucGCGGUUCc -3'
miRNA:   3'- -CGUGGccu-GCGCGa---GGuuUGCCAAGu -5'
32819 3' -54.8 NC_007346.1 + 239658 0.66 0.993958
Target:  5'- aGUACCGuAUGCaacacGCUCCuugGGCGGUUCc -3'
miRNA:   3'- -CGUGGCcUGCG-----CGAGGu--UUGCCAAGu -5'
32819 3' -54.8 NC_007346.1 + 116160 0.66 0.993958
Target:  5'- uCGCUGGACaGCGUUUCAaguauGACGGUg-- -3'
miRNA:   3'- cGUGGCCUG-CGCGAGGU-----UUGCCAagu -5'
32819 3' -54.8 NC_007346.1 + 238479 0.67 0.99216
Target:  5'- uGCACCacGGcaACGCGCgCCAAAgGGgUCGc -3'
miRNA:   3'- -CGUGG--CC--UGCGCGaGGUUUgCCaAGU- -5'
32819 3' -54.8 NC_007346.1 + 160562 0.67 0.987306
Target:  5'- gGCACCGGACGuUGUaCCGGACGu---- -3'
miRNA:   3'- -CGUGGCCUGC-GCGaGGUUUGCcaagu -5'
32819 3' -54.8 NC_007346.1 + 86608 0.69 0.971038
Target:  5'- cGguCUGGugGCGUgcggUCCAGGCGcUUCAg -3'
miRNA:   3'- -CguGGCCugCGCG----AGGUUUGCcAAGU- -5'
32819 3' -54.8 NC_007346.1 + 32404 0.69 0.971038
Target:  5'- gGCAUCGGACGUGgUUUuGGCGGUa-- -3'
miRNA:   3'- -CGUGGCCUGCGCgAGGuUUGCCAagu -5'
32819 3' -54.8 NC_007346.1 + 384593 0.72 0.896681
Target:  5'- uGCAUCGGAUGCaUUUgCAAGCGGUUCu -3'
miRNA:   3'- -CGUGGCCUGCGcGAG-GUUUGCCAAGu -5'
32819 3' -54.8 NC_007346.1 + 309478 0.75 0.757614
Target:  5'- cGgGCCGG-CGCGCUCCcGACGGa--- -3'
miRNA:   3'- -CgUGGCCuGCGCGAGGuUUGCCaagu -5'
32819 3' -54.8 NC_007346.1 + 134124 1.11 0.008577
Target:  5'- cGCACCGGACGCGCUCCAAACGGUUCAu -3'
miRNA:   3'- -CGUGGCCUGCGCGAGGUUUGCCAAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.