Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32819 | 5' | -55.7 | NC_007346.1 | + | 50239 | 0.7 | 0.905805 |
Target: 5'- --aGCAAUGgCCGCGGCgGCGgaaCAUCa -3' miRNA: 3'- uagUGUUACaGGCGCCG-CGCag-GUAG- -5' |
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32819 | 5' | -55.7 | NC_007346.1 | + | 134159 | 1.07 | 0.009885 |
Target: 5'- aAUCACAAUGUCCGCGGCGCGUCCAUCu -3' miRNA: 3'- -UAGUGUUACAGGCGCCGCGCAGGUAG- -5' |
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32819 | 5' | -55.7 | NC_007346.1 | + | 174824 | 0.72 | 0.836944 |
Target: 5'- uUCAUaAAUGUCUGCGGUGUgGUCCcgCa -3' miRNA: 3'- uAGUG-UUACAGGCGCCGCG-CAGGuaG- -5' |
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32819 | 5' | -55.7 | NC_007346.1 | + | 244851 | 0.7 | 0.91158 |
Target: 5'- uAUCACAaacAUGUgaCGCGaCGUGUCCGUCu -3' miRNA: 3'- -UAGUGU---UACAg-GCGCcGCGCAGGUAG- -5' |
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32819 | 5' | -55.7 | NC_007346.1 | + | 258316 | 0.7 | 0.92249 |
Target: 5'- -gCGCGGgaaucuaCGCGGCGUGUCCGUUg -3' miRNA: 3'- uaGUGUUacag---GCGCCGCGCAGGUAG- -5' |
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32819 | 5' | -55.7 | NC_007346.1 | + | 264986 | 0.66 | 0.981832 |
Target: 5'- -gCGCAAUGaUUGCGGCGgguguCGUCCGUg -3' miRNA: 3'- uaGUGUUACaGGCGCCGC-----GCAGGUAg -5' |
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32819 | 5' | -55.7 | NC_007346.1 | + | 274978 | 0.66 | 0.985385 |
Target: 5'- cUCGCGGUGcccaugCUGCccguCGCGUCCGUCa -3' miRNA: 3'- uAGUGUUACa-----GGCGcc--GCGCAGGUAG- -5' |
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32819 | 5' | -55.7 | NC_007346.1 | + | 285137 | 0.71 | 0.852234 |
Target: 5'- cGUC-CAGUggcgcGUCCaGUGGCGCGUCCAg- -3' miRNA: 3'- -UAGuGUUA-----CAGG-CGCCGCGCAGGUag -5' |
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32819 | 5' | -55.7 | NC_007346.1 | + | 361634 | 0.66 | 0.986949 |
Target: 5'- uGUCAUAAccgGUaaugcggagaaCCGCGGCG-GUCCAUg -3' miRNA: 3'- -UAGUGUUa--CA-----------GGCGCCGCgCAGGUAg -5' |
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32819 | 5' | -55.7 | NC_007346.1 | + | 372500 | 0.71 | 0.866803 |
Target: 5'- -aUACGugGUCCgGCGGUGCGUCCuUCg -3' miRNA: 3'- uaGUGUuaCAGG-CGCCGCGCAGGuAG- -5' |
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32819 | 5' | -55.7 | NC_007346.1 | + | 390481 | 0.66 | 0.983682 |
Target: 5'- --aGCAuucGUGUCCGCGGgGCaaCCAUg -3' miRNA: 3'- uagUGU---UACAGGCGCCgCGcaGGUAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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